Detailed information of deep learning profile BP000099.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in NB4 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000099.1
Cell line/tissue: NB4
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWN
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.06 0.16 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4506 4012 3786 5184 6459 4878 3753 4550 3637 4014 4604 4773 4892 4912 4423 3045 4329 5279 2077 874 11787 1678 3129 14993 345 6553 1573 380 779 3334 7035 2065 3022 6443 3443 5261 4216 5076 4575 4291 4876 5712 4355 4832 5062 5232 5062 5067 4980 4891 ]
C [ 4506 3650 4890 5833 4271 3955 3515 4716 7443 6645 5889 5462 5171 4579 5113 6309 4356 2477 14381 17722 1558 9939 6990 517 111 142 632 210 1404 12959 1820 9699 6099 4537 4096 3926 3810 5045 5723 6728 5797 4461 5159 4690 4593 4619 4629 4670 4953 4835 ]
G [ 4938 6366 6327 3802 4537 4592 4520 4397 3419 3683 4344 4512 4488 4124 4757 3268 6085 7976 1571 479 2537 6991 1857 2318 18760 12433 11167 18473 15627 1129 9162 5204 2135 5715 4983 4329 7656 5115 5136 3604 3844 5026 5150 5184 5097 4584 4669 5186 5165 5023 ]
T [ 5476 5398 4423 4607 4159 6001 7638 5763 4927 5084 4589 4679 4875 5811 5133 6804 4656 3694 1397 351 3544 818 7450 1598 210 298 6054 363 1616 2004 1409 2458 8170 2731 6904 5910 3744 4190 3992 4803 4909 4227 4762 4720 4674 4991 5066 4503 4328 4677 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.02 0.01 -0.01 -0.04 0.03 -0.03 -0.02 0.08 -0.06 0.03 -0.07 -0.06 -0.06 -0.02 0.02 -0.03 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.03 0.10 0.04 -0.02 -0.03 -0.07 -0.00 -0.03 -0.03 0.12 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.05 -0.03 -0.03 0.06 0.05 -0.02 0.03 0.17 0.13 0.10 0.17 0.12 -0.02 0.12 0.04 -0.01 0.03 0.02 0.01 0.03 0.01 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.05 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.07 0.01 -0.05 -0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages