Detailed information of deep learning profile BP000079.1

  1. Home
  2. Deep Learning Profile > BP000079.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in cardiac muscle cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000079.1
Cell line/tissue: cardiac muscle cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.09 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.10 0.19 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.09 0.07 0.18 0.12 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4876 4421 4144 5539 7175 5340 4157 4853 4018 4492 5129 5361 5130 5363 4633 3367 4712 5828 2345 1020 12221 1908 3558 16503 388 6630 2398 609 1186 4214 7066 2607 3660 6728 4006 5772 4451 5440 4864 4691 5391 5954 4864 5269 5453 5479 5414 5417 5479 5359 ]
C [ 5266 4168 5542 6634 4733 4633 4114 5238 8585 7398 6542 5847 5715 5160 6056 7473 5084 2814 15742 19621 1657 10685 8272 663 135 236 1093 418 1881 13345 2251 10179 6552 5142 4556 4509 4528 5607 6374 7271 6357 5080 5609 5235 5095 5229 5173 5333 5486 5435 ]
G [ 5466 6981 6998 4371 5066 5178 4903 5045 3765 4119 4779 5219 5125 4620 5390 3553 6645 8801 1864 490 3671 7984 2199 2589 20671 14199 12524 19842 16561 1609 10369 5754 2942 6477 5768 5036 8309 5844 5799 4361 4435 5694 5730 5880 5774 5360 5361 5755 5734 5660 ]
T [ 5848 5886 4772 4912 4482 6305 8282 6320 5088 5447 5006 5029 5486 6313 5377 7063 5015 4013 1505 325 3907 879 7427 1701 262 391 5441 587 1828 2288 1770 2916 8302 3109 7126 6139 4168 4565 4419 5133 5273 4728 5253 5072 5134 5388 5508 4951 4757 5002 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.11 -0.06 0.05 -0.06 -0.06 -0.06 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.01 0.01 0.03 0.06 0.04 -0.01 0.13 0.20 -0.02 0.13 0.06 -0.02 -0.04 -0.09 -0.00 -0.05 -0.03 0.13 -0.01 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.06 -0.03 -0.04 0.07 0.05 -0.03 0.02 0.20 0.15 0.12 0.19 0.14 -0.02 0.14 0.05 -0.01 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.05 -0.09 -0.03 -0.07 0.07 -0.03 -0.05 -0.08 0.02 -0.05 0.00 -0.03 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 777

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 182

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages