Detailed information of deep learning profile BP000079.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in cardiac muscle cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000079.1
Cell line/tissue: cardiac muscle cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.12 0.18 0.07 0.09 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.19 0.10 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.09 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5002 4757 4951 5508 5388 5134 5072 5253 4728 5273 5133 4419 4565 4168 6139 7126 3109 8302 2916 1770 2288 1828 587 5441 391 262 1701 7427 879 3907 325 1505 4013 5015 7063 5377 6313 5486 5029 5006 5447 5088 6320 8282 6305 4482 4912 4772 5886 5848 ]
C [ 5660 5734 5755 5361 5360 5774 5880 5730 5694 4435 4361 5799 5844 8309 5036 5768 6477 2942 5754 10369 1609 16561 19842 12524 14199 20671 2589 2199 7984 3671 490 1864 8801 6645 3553 5390 4620 5125 5219 4779 4119 3765 5045 4903 5178 5066 4371 6998 6981 5466 ]
G [ 5435 5486 5333 5173 5229 5095 5235 5609 5080 6357 7271 6374 5607 4528 4509 4556 5142 6552 10179 2251 13345 1881 418 1093 236 135 663 8272 10685 1657 19621 15742 2814 5084 7473 6056 5160 5715 5847 6542 7398 8585 5238 4114 4633 4733 6634 5542 4168 5266 ]
T [ 5359 5479 5417 5414 5479 5453 5269 4864 5954 5391 4691 4864 5440 4451 5772 4006 6728 3660 2607 7066 4214 1186 609 2398 6630 388 16503 3558 1908 12221 1020 2345 5828 4712 3367 4633 5363 5130 5361 5129 4492 4018 4853 4157 5340 7175 5539 4144 4421 4876 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.03 0.00 -0.05 0.02 -0.08 -0.05 -0.03 0.07 -0.07 -0.03 -0.09 -0.05 -0.02 -0.01 0.02 0.00 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.01 0.05 0.14 -0.02 0.14 0.19 0.12 0.15 0.20 0.02 -0.03 0.05 0.07 -0.04 -0.03 0.06 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.01 0.13 -0.03 -0.05 -0.00 -0.09 -0.04 -0.02 0.06 0.13 -0.02 0.20 0.13 -0.01 0.04 0.06 0.03 0.01 0.01 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.06 -0.06 -0.06 0.05 -0.06 0.11 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 777

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 182

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages