Detailed information of deep learning profile BP000069.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12865 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000069.1
Cell line/tissue: GM12865
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.11 0.18 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.19 0.11 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4763 4606 4753 5416 5249 5020 4923 5040 4390 5253 5101 4180 4403 3847 5986 7112 2832 8432 2648 1464 2268 1926 492 6455 289 207 1559 7818 785 3399 237 1382 3744 4902 7325 5432 6156 5267 4902 4815 5356 5025 6123 8368 6289 4241 4727 4615 5817 5889 ]
C [ 5298 5334 5416 4791 4799 5272 5405 5398 5320 3921 3676 5176 5485 8016 4534 5194 5861 2481 5361 9501 1383 15749 19101 11391 13043 19685 2280 1957 7131 2865 328 1633 8427 6290 3246 4896 4343 4634 4769 4516 3693 3336 4629 4482 4771 4815 3885 6739 6836 5111 ]
G [ 5068 5169 4926 4860 4728 4616 4862 5403 4462 6153 7053 6275 5368 3983 4073 4241 4929 6204 9970 2030 13265 1719 314 898 245 134 650 7275 10933 1422 19197 15282 2443 4599 6623 5367 4733 5378 5641 6039 7092 8191 4937 3659 4132 4343 6287 5097 3605 4770 ]
T [ 5234 5254 5268 5296 5587 5455 5173 4522 6191 5036 4533 4732 5107 4517 5770 3816 6741 3246 2384 7368 3447 969 456 1619 6786 337 15874 3313 1514 12677 601 2066 5749 4572 3169 4668 5131 5084 5051 4993 4222 3811 4674 3854 5171 6964 5464 3912 4105 4593 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.02 0.01 -0.04 0.02 -0.07 -0.04 -0.03 0.06 -0.07 -0.03 -0.10 -0.05 -0.02 -0.01 0.02 0.01 0.01 -0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.03 0.04 0.00 0.05 0.14 -0.01 0.13 0.19 0.12 0.14 0.19 0.02 -0.00 0.06 0.08 -0.02 -0.02 0.07 0.05 0.01 0.03 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.02 0.02 0.04 0.05 0.08 -0.01 0.13 -0.02 -0.03 0.00 -0.06 -0.01 0.01 0.06 0.13 -0.02 0.20 0.14 -0.00 0.05 0.06 0.03 0.02 0.03 0.04 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.07 -0.07 0.04 -0.06 0.10 -0.01 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.01 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 298

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages