Detailed information of deep learning profile BP000069.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12865 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000069.1
Cell line/tissue: GM12865
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.11 0.19 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.18 0.11 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4593 4105 3912 5464 6964 5171 3854 4674 3811 4222 4993 5051 5084 5131 4668 3169 4572 5749 2066 601 12677 1514 3313 15874 337 6786 1619 456 969 3447 7368 2384 3246 6741 3816 5770 4517 5107 4732 4533 5036 6191 4522 5173 5455 5587 5296 5268 5254 5234 ]
C [ 4770 3605 5097 6287 4343 4132 3659 4937 8191 7092 6039 5641 5378 4733 5367 6623 4599 2443 15282 19197 1422 10933 7275 650 134 245 898 314 1719 13265 2030 9970 6204 4929 4241 4073 3983 5368 6275 7053 6153 4462 5403 4862 4616 4728 4860 4926 5169 5068 ]
G [ 5111 6836 6739 3885 4815 4771 4482 4629 3336 3693 4516 4769 4634 4343 4896 3246 6290 8427 1633 328 2865 7131 1957 2280 19685 13043 11391 19101 15749 1383 9501 5361 2481 5861 5194 4534 8016 5485 5176 3676 3921 5320 5398 5405 5272 4799 4791 5416 5334 5298 ]
T [ 5889 5817 4615 4727 4241 6289 8368 6123 5025 5356 4815 4902 5267 6156 5432 7325 4902 3744 1382 237 3399 785 7818 1559 207 289 6455 492 1926 2268 1464 2648 8432 2832 7112 5986 3847 4403 4180 5101 5253 4390 5040 4923 5020 5249 5416 4753 4606 4763 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.01 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.01 0.10 -0.06 0.04 -0.07 -0.07 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.04 0.03 0.02 0.03 0.06 0.05 -0.00 0.14 0.20 -0.02 0.13 0.06 0.01 -0.01 -0.06 0.00 -0.03 -0.02 0.13 -0.01 0.08 0.05 0.04 0.02 0.02 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.05 0.07 -0.02 -0.02 0.08 0.06 -0.00 0.02 0.19 0.14 0.12 0.19 0.13 -0.01 0.14 0.05 0.00 0.04 0.03 0.01 0.04 0.02 ]
T [ -0.00 -0.00 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.10 -0.03 -0.07 0.06 -0.03 -0.04 -0.07 0.02 -0.04 0.01 -0.02 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 298

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages