Detailed information of deep learning profile BP000066.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM06990 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000066.1
Cell line/tissue: GM06990
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.20 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.11 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.10 0.07 0.20 0.13 0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4670 4329 4045 5157 6278 4921 4128 4653 4019 4334 4766 4964 4903 5095 4629 3307 4526 5495 2299 1167 11237 1973 3456 15326 418 6221 1946 416 968 3492 6923 2192 3329 6655 3675 5471 4353 5246 4622 4451 4912 5764 4601 4992 5320 5233 5130 5182 5082 5037 ]
C [ 4968 4189 5330 6112 4692 4561 4175 5208 7763 6943 6177 5712 5537 5046 5634 6855 4981 2812 14726 18352 1971 10212 7443 728 120 213 922 221 1639 13633 2113 10232 6530 5076 4547 4367 4295 5358 6150 7037 6219 4892 5523 5165 4943 5072 5052 5166 5311 5245 ]
G [ 5454 6656 6541 4463 5121 5123 4968 4957 3943 4237 4795 5051 5036 4670 5234 3720 6330 8550 2006 643 3433 7402 2396 2593 19808 13783 11598 19545 16222 1352 10057 5414 2526 6014 5512 4803 8143 5683 5697 4094 4307 5500 5650 5563 5496 5242 5314 5605 5659 5624 ]
T [ 5502 5420 4678 4862 4503 5989 7323 5776 4869 5080 4856 4867 5118 5783 5097 6712 4757 3737 1563 432 3953 1007 7299 1947 248 377 6128 412 1765 2117 1501 2756 8209 2849 6860 5953 3803 4307 4125 5012 5156 4438 4820 4874 4835 5047 5098 4641 4542 4688 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.10 -0.06 0.05 -0.06 -0.07 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.01 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.05 -0.01 0.14 0.22 -0.00 0.14 0.07 -0.00 -0.02 -0.07 0.00 -0.04 -0.03 0.15 -0.02 0.08 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.07 -0.03 -0.03 0.08 0.06 -0.02 0.03 0.21 0.16 0.13 0.21 0.16 -0.02 0.16 0.06 -0.00 0.04 0.03 0.01 0.05 0.02 ]
T [ 0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.09 -0.02 -0.06 0.07 -0.02 -0.05 -0.08 0.03 -0.04 0.01 -0.03 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 712

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages