Detailed information of deep learning profile BP000066.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM06990 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000066.1
Cell line/tissue: GM06990
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 0.00 0.13 0.20 0.07 0.10 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.11 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.20 0.11 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4688 4542 4641 5098 5047 4835 4874 4820 4438 5156 5012 4125 4307 3803 5953 6860 2849 8209 2756 1501 2117 1765 412 6128 377 248 1947 7299 1007 3953 432 1563 3737 4757 6712 5097 5783 5118 4867 4856 5080 4869 5776 7323 5989 4503 4862 4678 5420 5502 ]
C [ 5624 5659 5605 5314 5242 5496 5563 5650 5500 4307 4094 5697 5683 8143 4803 5512 6014 2526 5414 10057 1352 16222 19545 11598 13783 19808 2593 2396 7402 3433 643 2006 8550 6330 3720 5234 4670 5036 5051 4795 4237 3943 4957 4968 5123 5121 4463 6541 6656 5454 ]
G [ 5245 5311 5166 5052 5072 4943 5165 5523 4892 6219 7037 6150 5358 4295 4367 4547 5076 6530 10232 2113 13633 1639 221 922 213 120 728 7443 10212 1971 18352 14726 2812 4981 6855 5634 5046 5537 5712 6177 6943 7763 5208 4175 4561 4692 6112 5330 4189 4968 ]
T [ 5037 5082 5182 5130 5233 5320 4992 4601 5764 4912 4451 4622 5246 4353 5471 3675 6655 3329 2192 6923 3492 968 416 1946 6221 418 15326 3456 1973 11237 1167 2299 5495 4526 3307 4629 5095 4903 4964 4766 4334 4019 4653 4128 4921 6278 5157 4045 4329 4670 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.03 0.01 -0.04 0.03 -0.08 -0.05 -0.02 0.07 -0.06 -0.02 -0.09 -0.04 -0.02 -0.01 0.02 0.00 0.01 -0.00 0.00 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.00 0.06 0.16 -0.02 0.16 0.21 0.13 0.16 0.21 0.03 -0.02 0.06 0.08 -0.03 -0.03 0.07 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.08 -0.02 0.15 -0.03 -0.04 0.00 -0.07 -0.02 -0.00 0.07 0.14 -0.00 0.22 0.14 -0.01 0.05 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.01 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.07 -0.06 0.05 -0.06 0.10 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 712

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages