Detailed information of deep learning profile BP000051.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in D721Med using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000051.1
Cell line/tissue: D721Med
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMY
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 -0.00 0.15 0.21 0.07 0.09 0.23 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.05 -0.00 0.12 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.20 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5319 5354 5313 5020 5187 5921 5719 5317 5477 5565 4817 5778 5495 4539 4697 4199 6732 7985 2756 9484 2649 1390 2044 1908 358 7205 253 218 1921 8025 1049 3955 464 1917 4170 5493 7543 5747 6426 5697 5316 5145 5789 5518 6459 8374 6671 4892 5286 5150 ]
C [ 5802 5689 5652 5826 5953 5190 5140 5793 5897 5880 5735 3821 3616 5706 5878 8996 4792 5700 6289 2128 5912 10888 933 18603 21255 12355 13902 21372 2438 2187 8154 3294 614 2113 8995 6653 3780 5448 4781 5050 5180 4936 4338 4037 5072 5194 5214 5223 4492 6766 ]
G [ 5609 5375 5381 5602 5257 5176 5077 5079 5127 5874 4833 6909 8187 6922 5796 4176 4219 4572 5431 7252 11450 1408 15485 1012 133 790 194 100 650 8112 10833 1711 19907 15382 2962 4894 7065 5867 5290 5840 6141 6637 7228 8054 5431 4133 4647 4856 6363 5643 ]
T [ 5395 5707 5779 5677 5728 5838 6189 5936 5624 4806 6740 5617 4827 4958 5754 4754 6382 3868 7649 3261 2114 8439 3663 602 379 1775 7776 435 17116 3801 2089 13165 1140 2713 5998 5085 3737 5063 5628 5538 5488 5407 4770 4516 5163 4424 5593 7154 5984 4566 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.04 -0.06 0.04 -0.02 -0.08 -0.03 0.01 -0.04 0.04 -0.09 -0.04 -0.03 0.07 -0.07 -0.02 -0.09 -0.04 -0.02 -0.01 0.02 0.00 0.01 ]
C [ 0.02 0.05 0.00 0.03 0.03 -0.02 0.05 0.17 -0.02 0.17 0.22 0.14 0.17 0.23 0.03 -0.00 0.06 0.08 -0.03 -0.02 0.07 0.05 0.00 0.02 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.04 0.06 0.10 -0.03 0.17 -0.02 -0.04 -0.01 -0.08 -0.04 -0.00 0.06 0.14 -0.01 0.22 0.13 -0.01 0.04 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.03 0.04 -0.03 -0.04 0.02 -0.03 -0.08 -0.06 -0.09 0.06 -0.07 0.11 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages