Detailed information of deep learning profile BP000051.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in D721Med using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000051.1
Cell line/tissue: D721Med
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMY
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.20 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.12 -0.00 0.05 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.23 0.09 0.07 0.21 0.15 -0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4566 5984 7154 5593 4424 5163 4516 4770 5407 5488 5538 5628 5063 3737 5085 5998 2713 1140 13165 2089 3801 17116 435 7776 1775 379 602 3663 8439 2114 3261 7649 3868 6382 4754 5754 4958 4827 5617 6740 4806 5624 5936 6189 5838 5728 5677 5779 5707 5395 ]
C [ 5643 6363 4856 4647 4133 5431 8054 7228 6637 6141 5840 5290 5867 7065 4894 2962 15382 19907 1711 10833 8112 650 100 194 790 133 1012 15485 1408 11450 7252 5431 4572 4219 4176 5796 6922 8187 6909 4833 5874 5127 5079 5077 5176 5257 5602 5381 5375 5609 ]
G [ 6766 4492 5223 5214 5194 5072 4037 4338 4936 5180 5050 4781 5448 3780 6653 8995 2113 614 3294 8154 2187 2438 21372 13902 12355 21255 18603 933 10888 5912 2128 6289 5700 4792 8996 5878 5706 3616 3821 5735 5880 5897 5793 5140 5190 5953 5826 5652 5689 5802 ]
T [ 5150 5286 4892 6671 8374 6459 5518 5789 5145 5316 5697 6426 5747 7543 5493 4170 1917 464 3955 1049 8025 1921 218 253 7205 358 1908 2044 1390 2649 9484 2756 7985 6732 4199 4697 4539 5495 5778 4817 5565 5477 5317 5719 5921 5187 5020 5313 5354 5319 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.11 -0.07 0.06 -0.09 -0.06 -0.08 -0.03 0.02 -0.04 -0.03 0.04 -0.03 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.04 -0.01 0.13 0.22 -0.01 0.14 0.06 -0.00 -0.04 -0.08 -0.01 -0.04 -0.02 0.17 -0.03 0.10 0.06 0.04 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.02 0.00 0.05 0.07 -0.02 -0.03 0.08 0.06 -0.00 0.03 0.23 0.17 0.14 0.22 0.17 -0.02 0.17 0.05 -0.02 0.03 0.03 0.00 0.05 0.02 ]
T [ 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.09 -0.02 -0.07 0.07 -0.03 -0.04 -0.09 0.04 -0.04 0.01 -0.03 -0.08 -0.02 0.04 -0.06 0.04 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages