Detailed information of deep learning profile BP000047.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000047.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.01 0.00 -0.00 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.00 0.02 0.06 0.00 0.11 0.17 0.06 0.08 0.18 0.00 0.00 0.02 0.01 0.00 -0.00 0.03 0.02 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 0.00 0.10 0.00 0.00 0.00 -0.00 0.00 0.00 0.02 0.06 0.00 0.18 0.10 0.00 0.01 0.02 0.01 ]
T [ -0.00 -0.01 0.00 -0.01 -0.01 0.00 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 0.05 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.01 ]

Frequency matrix

       
A [ 4390 4114 4284 4674 4664 4437 4431 4384 3988 4644 4404 3724 4100 3491 5265 6127 2873 6925 2526 1610 2155 1708 448 6485 424 260 2123 6359 808 3960 89 1364 3481 4507 6419 4563 5304 4472 4315 4189 4585 4618 5152 6623 5477 3901 4274 4067 5041 5066 ]
C [ 5125 5391 5340 4864 4868 5145 5204 5339 5285 4033 3819 5103 5295 7302 4712 5355 5529 2479 5409 8604 1184 14975 18217 10226 12602 18640 2697 2088 7486 1692 86 1544 8155 6235 3119 4815 4236 4895 4826 4512 4041 3659 4806 4832 4771 4938 4247 6237 6524 5181 ]
G [ 5029 5166 4919 4923 4984 4811 5084 5303 4629 5918 6930 6269 5145 4358 4316 4362 4945 6631 9175 2059 12123 1738 179 661 196 85 556 7694 9609 1368 18807 14509 2779 4356 6621 5760 5045 5474 5516 6042 6688 7335 5181 3976 4441 4716 5865 5277 3944 4825 ]
T [ 4749 4622 4750 4832 4777 4900 4574 4267 5391 4698 4140 4197 4753 4142 5000 3449 5946 3258 2183 7020 3831 872 449 1921 6071 308 13917 3152 1390 12273 311 1876 4878 4195 3134 4155 4708 4452 4636 4550 3979 3681 4154 3862 4604 5738 4907 3712 3784 4221 ]

Hypothetical CWM

   
A [ -0.01 -0.02 -0.01 -0.01 -0.02 -0.02 -0.02 -0.01 0.01 -0.05 0.01 -0.02 -0.08 -0.04 -0.01 -0.05 0.01 -0.08 -0.05 -0.03 0.04 -0.07 -0.04 -0.09 -0.05 -0.03 -0.02 0.00 -0.01 -0.01 -0.02 -0.02 -0.02 -0.02 -0.02 -0.01 0.01 -0.00 -0.02 -0.01 -0.01 -0.01 -0.01 ]
C [ 0.03 0.03 0.02 0.01 0.03 0.03 0.05 0.02 0.04 0.05 0.02 0.06 0.14 -0.01 0.14 0.18 0.11 0.14 0.19 0.04 0.01 0.07 0.09 -0.01 -0.01 0.07 0.06 0.02 0.03 0.03 0.03 0.02 0.02 0.02 0.01 0.02 0.02 0.03 0.03 0.02 0.04 0.04 0.03 ]
G [ 0.03 0.02 0.04 0.05 0.04 0.04 0.03 0.03 0.03 0.05 0.06 0.08 0.00 0.14 -0.00 -0.02 0.02 -0.04 -0.01 0.01 0.06 0.12 -0.00 0.19 0.13 0.01 0.05 0.07 0.04 0.03 0.03 0.04 0.04 0.05 0.06 0.02 0.01 0.02 0.02 0.04 0.03 0.02 0.03 ]
T [ -0.02 -0.01 -0.01 -0.02 -0.02 -0.01 -0.02 -0.01 -0.04 0.01 -0.03 -0.04 0.01 -0.03 -0.07 -0.07 -0.08 0.03 -0.07 0.06 -0.02 -0.03 0.03 -0.04 -0.02 0.00 -0.03 -0.04 -0.02 -0.01 -0.01 -0.01 -0.02 -0.02 -0.02 -0.01 -0.02 -0.01 -0.00 -0.01 -0.02 -0.02 -0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3232

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 485

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 381

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 120

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages