Detailed information of deep learning profile BP000044.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCaP clone FGC using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000044.1
Cell line/tissue: LNCaP clone FGC
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5042 5174 5022 4840 4921 5397 5435 5073 5138 5258 4787 5574 5217 4443 4553 4163 6480 7441 2865 8611 2842 1481 2031 1860 437 7268 350 331 2073 7510 992 3995 439 1869 4005 5210 7135 5354 6131 5350 5164 5070 5517 5215 6145 7795 6405 4761 5095 4973 ]
C [ 5528 5423 5419 5629 5547 5103 5089 5585 5567 5690 5401 3947 3839 5629 5486 8279 4635 5358 5965 2399 5695 10132 990 17014 20019 10775 13341 20139 2670 2391 7879 3309 608 2073 8500 6393 3643 5134 4490 4928 5027 4763 4167 3879 4919 4943 4889 4952 4394 6433 ]
G [ 5331 4985 5196 5258 5167 4953 5014 4849 4921 5367 4663 6225 7223 6150 5401 4143 4225 4429 5148 6666 10311 1665 14159 1421 153 991 232 145 727 7476 10098 1727 18963 14431 2834 4629 6756 5657 5112 5569 5648 6146 6760 7615 5139 4024 4494 4710 6047 5287 ]
T [ 5190 5509 5454 5364 5456 5638 5553 5584 5465 4776 6240 5345 4812 4869 5651 4506 5751 3863 7113 3415 2243 7813 3911 796 482 2057 7168 476 15621 3714 2122 12060 1081 2718 5752 4859 3557 4946 5358 5244 5252 5112 4647 4382 4888 4329 5303 6668 5555 4398 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.04 -0.07 -0.04 -0.02 0.06 -0.06 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 ]
C [ 0.02 0.05 0.00 0.03 0.03 -0.01 0.05 0.15 -0.03 0.15 0.19 0.12 0.15 0.20 0.03 -0.00 0.06 0.08 -0.03 -0.02 0.06 0.04 0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.09 -0.02 0.15 -0.03 -0.04 -0.00 -0.07 -0.04 0.00 0.05 0.12 -0.02 0.19 0.12 -0.01 0.04 0.05 0.02 0.01 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.01 -0.06 -0.05 -0.06 0.05 -0.06 0.09 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 797

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 187

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 26

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
BP000061.1 CTCF ENCSR000DPV AG10803 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages