Detailed information of deep learning profile BP000044.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCaP clone FGC using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000044.1
Cell line/tissue: LNCaP clone FGC
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.01 0.01 ]

Frequency matrix

       
A [ 4398 5555 6668 5303 4329 4888 4382 4647 5112 5252 5244 5358 4946 3557 4859 5752 2718 1081 12060 2122 3714 15621 476 7168 2057 482 796 3911 7813 2243 3415 7113 3863 5751 4506 5651 4869 4812 5345 6240 4776 5465 5584 5553 5638 5456 5364 5454 5509 5190 ]
C [ 5287 6047 4710 4494 4024 5139 7615 6760 6146 5648 5569 5112 5657 6756 4629 2834 14431 18963 1727 10098 7476 727 145 232 991 153 1421 14159 1665 10311 6666 5148 4429 4225 4143 5401 6150 7223 6225 4663 5367 4921 4849 5014 4953 5167 5258 5196 4985 5331 ]
G [ 6433 4394 4952 4889 4943 4919 3879 4167 4763 5027 4928 4490 5134 3643 6393 8500 2073 608 3309 7879 2391 2670 20139 13341 10775 20019 17014 990 10132 5695 2399 5965 5358 4635 8279 5486 5629 3839 3947 5401 5690 5567 5585 5089 5103 5547 5629 5419 5423 5528 ]
T [ 4973 5095 4761 6405 7795 6145 5215 5517 5070 5164 5350 6131 5354 7135 5210 4005 1869 439 3995 992 7510 2073 331 350 7268 437 1860 2031 1481 2842 8611 2865 7441 6480 4163 4553 4443 5217 5574 4787 5258 5138 5073 5435 5397 4921 4840 5022 5174 5042 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.09 -0.06 0.05 -0.06 -0.05 -0.06 -0.01 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.01 0.02 0.05 0.04 -0.01 0.12 0.19 -0.02 0.12 0.05 0.00 -0.04 -0.07 -0.00 -0.04 -0.03 0.15 -0.02 0.09 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.00 0.04 0.06 -0.02 -0.03 0.08 0.06 -0.00 0.03 0.20 0.15 0.12 0.19 0.15 -0.03 0.15 0.05 -0.01 0.03 0.03 0.00 0.05 0.02 ]
T [ 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.06 0.06 -0.02 -0.04 -0.07 0.04 -0.04 0.01 -0.03 -0.07 -0.01 0.03 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 797

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 187

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 26

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages