Detailed information of deep learning profile BP000035.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM13977 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000035.1
Cell line/tissue: GM13977
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4870 5021 4715 4494 4623 5310 5184 4974 4918 4990 4467 5272 5130 4134 4459 3864 6154 7338 2642 8706 2551 1340 2114 1835 373 6637 293 310 1935 7459 975 3814 374 1677 3773 5035 6916 5313 5908 5244 4808 4861 5170 5092 5877 7543 6194 4541 4893 4737 ]
C [ 5651 5250 5467 5579 5608 4969 5054 5450 5562 5587 5420 3927 3686 5377 5520 8342 4577 5328 5920 2127 5400 10090 1127 16682 19626 11285 13292 19723 2662 2318 7549 3294 602 1995 8507 6307 3550 5131 4554 4906 5009 4700 4166 3864 4938 4977 4912 4993 4268 6543 ]
G [ 5154 5047 5161 5245 5086 5025 4981 4740 5030 5435 4536 6299 7374 6423 5425 3945 4157 4335 5135 6651 10582 1670 13970 1323 173 874 188 130 678 7323 10098 1770 18485 14401 2788 4598 6673 5567 5069 5439 5844 6081 6861 7523 5073 3998 4454 4664 6126 5282 ]
T [ 4898 5255 5230 5255 5256 5269 5354 5409 5063 4561 6150 5075 4383 4639 5169 4422 5685 3572 6876 3089 2040 7473 3362 733 401 1777 6800 410 15298 3473 1951 11695 1112 2500 5505 4633 3434 4562 5042 4984 4912 4931 4376 4094 4685 4055 5013 6375 5286 4011 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 0.01 -0.04 0.03 -0.08 -0.05 -0.03 0.06 -0.06 -0.03 -0.08 -0.03 -0.02 -0.01 0.02 0.00 0.01 ]
C [ 0.01 0.04 -0.00 0.02 0.03 -0.01 0.04 0.13 -0.02 0.13 0.17 0.11 0.13 0.18 0.02 -0.01 0.05 0.07 -0.03 -0.02 0.05 0.04 -0.00 0.02 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 -0.02 -0.08 -0.03 -0.01 0.05 0.10 -0.02 0.18 0.11 -0.01 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.06 -0.06 -0.06 0.04 -0.06 0.09 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 934

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 87

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 24

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages