Detailed information of deep learning profile BP000035.1

  1. Home
  2. Deep Learning Profile > BP000035.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in GM13977 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000035.1
Cell line/tissue: GM13977
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4011 5286 6375 5013 4055 4685 4094 4376 4931 4912 4984 5042 4562 3434 4633 5505 2500 1112 11695 1951 3473 15298 410 6800 1777 401 733 3362 7473 2040 3089 6876 3572 5685 4422 5169 4639 4383 5075 6150 4561 5063 5409 5354 5269 5256 5255 5230 5255 4898 ]
C [ 5282 6126 4664 4454 3998 5073 7523 6861 6081 5844 5439 5069 5567 6673 4598 2788 14401 18485 1770 10098 7323 678 130 188 874 173 1323 13970 1670 10582 6651 5135 4335 4157 3945 5425 6423 7374 6299 4536 5435 5030 4740 4981 5025 5086 5245 5161 5047 5154 ]
G [ 6543 4268 4993 4912 4977 4938 3864 4166 4700 5009 4906 4554 5131 3550 6307 8507 1995 602 3294 7549 2318 2662 19723 13292 11285 19626 16682 1127 10090 5400 2127 5920 5328 4577 8342 5520 5377 3686 3927 5420 5587 5562 5450 5054 4969 5608 5579 5467 5250 5651 ]
T [ 4737 4893 4541 6194 7543 5877 5092 5170 4861 4808 5244 5908 5313 6916 5035 3773 1677 374 3814 975 7459 1935 310 293 6637 373 1835 2114 1340 2551 8706 2642 7338 6154 3864 4459 4134 5130 5272 4467 4990 4918 4974 5184 5310 4623 4494 4715 5021 4870 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.09 -0.06 0.04 -0.06 -0.06 -0.06 -0.02 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.01 0.11 0.18 -0.02 0.10 0.05 -0.01 -0.03 -0.08 -0.02 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.02 -0.00 0.04 0.05 -0.02 -0.03 0.07 0.05 -0.01 0.02 0.18 0.13 0.11 0.17 0.13 -0.02 0.13 0.04 -0.01 0.03 0.02 -0.00 0.04 0.01 ]
T [ 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.08 -0.03 -0.06 0.06 -0.03 -0.05 -0.08 0.03 -0.04 0.01 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 934

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 87

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 24

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages