Detailed information of deep learning profile BP000032.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM10266 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000032.1
Cell line/tissue: GM10266
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.04 -0.00 -0.01 0.10 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.01 -0.01 -0.00 0.01 ]
C [ 0.01 0.01 0.00 0.00 0.13 0.24 0.01 0.09 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.12 0.00 0.04 0.01 0.00 ]
G [ 0.00 -0.01 0.02 0.03 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.25 0.06 0.10 0.21 0.11 0.00 0.05 0.01 -0.00 0.01 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.01 -0.00 0.00 -0.01 -0.01 -0.00 0.02 -0.01 ]

Frequency matrix

       
A [ 67 63 53 57 52 46 58 45 45 56 50 42 45 57 31 22 28 9 10 80 72 23 38 34 14 30 53 29 70 34 48 16 39 42 14 11 130 7 34 142 5 96 11 6 7 23 76 26 19 53 ]
C [ 29 34 22 33 35 39 24 51 30 45 23 48 48 25 41 89 9 6 103 24 28 28 15 73 105 58 30 63 28 55 58 47 25 31 142 161 9 114 69 6 2 2 2 1 24 115 13 82 59 37 ]
G [ 36 32 62 33 41 39 55 45 48 39 46 38 32 45 59 26 13 152 7 17 40 19 54 24 14 38 68 58 27 21 28 25 75 76 9 1 11 44 6 15 164 68 106 165 119 15 56 49 16 49 ]
T [ 42 45 37 51 46 50 37 33 51 34 55 46 49 47 43 37 124 7 54 53 34 104 67 43 41 48 23 24 49 64 40 86 35 25 9 1 24 9 65 11 3 8 55 2 24 21 29 17 80 35 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 -0.01 -0.04 -0.02 0.04 -0.01 -0.03 0.05 -0.03 -0.01 0.12 -0.07 0.06 -0.09 -0.06 -0.07 -0.02 0.02 -0.03 -0.02 0.03 ]
C [ 0.04 0.02 0.01 0.02 0.07 0.04 -0.01 0.16 0.25 -0.03 0.15 0.05 0.00 -0.03 -0.08 -0.02 -0.05 -0.01 0.17 -0.02 0.09 0.06 0.04 ]
G [ 0.01 0.03 0.02 0.03 -0.00 0.06 0.07 -0.04 -0.04 0.10 0.07 0.00 0.03 0.26 0.18 0.16 0.22 0.16 -0.01 0.17 0.05 -0.01 0.04 ]
T [ -0.00 0.00 0.01 0.01 0.03 -0.01 -0.03 -0.04 -0.10 -0.03 -0.08 0.09 -0.04 -0.06 -0.09 0.04 -0.04 0.01 -0.04 -0.07 -0.01 0.04 -0.04 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20199

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 161

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 84

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000372.1 CTCF ENCSR778ZPK heart left ventricle Homo sapiens MA0139.2
BP000373.1 CTCF ENCSR779YTI middle frontal area 46 Homo sapiens MA0139.2
BP000374.1 CTCF ENCSR782BSY placenta Homo sapiens MA0139.2
BP000375.1 CTCF ENCSR785YRL neutrophil Homo sapiens MA0139.2
BP000376.1 CTCF ENCSR791AYW heart left ventricle Homo sapiens MA0139.2
BP000377.1 CTCF ENCSR793YAD tibial nerve Homo sapiens MA0139.2
BP000378.1 CTCF ENCSR798NVH uterus Homo sapiens MA0139.2
BP000379.1 CTCF ENCSR799GJD nephron progenitor cell Homo sapiens MA0139.2
BP000380.1 CTCF ENCSR799TJD upper lobe of left lung Homo sapiens MA0139.2
BP000381.1 CTCF ENCSR799WDT Peyer's patch Homo sapiens MA0139.2
Showing 10 profiles of page 38 from 45 pages