Detailed information of deep learning profile BP000372.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000372.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR778ZPK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.18 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 3553 3476 3479 4006 3985 3822 3696 3847 3328 3975 3908 3127 3347 2864 4683 5442 1814 6508 1685 1034 1457 1267 179 5202 177 136 1088 5581 579 2518 180 1104 2942 3758 5424 4110 4534 3957 3721 3610 4006 3880 4468 6105 4727 3259 3599 3497 4220 4413 ]
C [ 4188 4214 4243 3747 3658 4130 4264 4228 4111 2826 2698 4108 4231 6360 3405 4160 4640 1762 4640 7406 632 13356 15087 8368 9550 15086 1620 1478 5878 2435 201 1253 6493 4921 2597 3883 3244 3573 3716 3530 3065 2678 3651 3534 3841 3690 3089 5025 5196 3965 ]
G [ 3844 3945 3882 3747 3628 3651 3739 4197 3395 4823 5604 4968 4041 2935 3089 3246 3751 5019 7668 968 11010 562 59 754 147 79 488 5966 7897 1001 14491 11532 1991 3316 5201 4155 3820 4177 4317 4703 5277 6003 3894 2868 3245 3380 4818 4027 2999 3749 ]
T [ 3989 3939 3970 4074 4303 3971 3875 3302 4740 3950 3364 3371 3955 3415 4397 2726 5369 2285 1581 6166 2475 389 249 1250 5700 273 12378 2549 1220 9620 702 1685 4148 3579 2352 3426 3976 3867 3820 3731 3226 3013 3561 3067 3761 5245 4068 3025 3159 3447 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.07 -0.02 0.00 -0.04 0.03 -0.07 -0.04 -0.04 0.07 -0.06 -0.03 -0.09 -0.04 -0.02 -0.00 0.03 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.05 0.13 -0.03 0.13 0.18 0.11 0.14 0.19 0.03 -0.02 0.05 0.08 -0.03 -0.03 0.06 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 -0.00 -0.08 -0.02 -0.01 0.06 0.13 -0.03 0.20 0.13 -0.02 0.04 0.06 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.05 -0.06 -0.07 0.05 -0.06 0.11 -0.02 -0.03 0.05 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3484

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 865

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 187

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 74

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages