Detailed information of deep learning profile BP000373.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000373.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR779YTI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.10 0.00 0.00 0.00 0.00 -0.00 0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4386 4223 4350 5055 4848 4495 4556 4522 4136 4871 4789 3810 3984 3573 5672 6746 2304 7840 2222 1131 1677 1588 299 6117 260 221 1629 7138 816 3046 208 1572 3526 4608 6607 4889 5503 4768 4558 4414 4917 4767 5523 7330 5743 4153 4460 4347 5213 5353 ]
C [ 5001 5094 5210 4434 4496 5013 5175 5239 5005 3493 3208 4876 5261 7724 4157 4757 5795 2294 5475 9518 856 15870 18225 10509 11480 18226 2199 1822 6939 2954 260 1635 7948 5860 3180 4901 4078 4460 4575 4379 3686 3391 4542 4334 4564 4582 3939 5976 6168 4884 ]
G [ 4787 4805 4653 4555 4431 4460 4520 5143 4137 5820 6795 6030 5031 3567 3798 4262 4400 6032 9516 1180 13486 1028 157 991 290 134 684 6763 9685 1284 17988 13634 2519 4255 6336 5000 4478 5054 5260 5661 6285 7144 4669 3633 4032 4187 5621 4923 3795 4523 ]
T [ 4843 4895 4804 4973 5242 5049 4766 4113 5739 4833 4225 4301 4741 4153 5390 3252 6518 2851 1804 7188 2998 531 336 1400 6987 436 14505 3294 1577 11733 561 2176 5024 4294 2894 4227 4958 4735 4624 4563 4129 3715 4283 3720 4678 6095 4997 3771 3841 4257 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.03 0.06 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.00 0.01 0.00 0.00 ]
C [ 0.02 0.02 0.04 0.01 0.03 0.04 0.00 0.06 0.15 -0.01 0.15 0.19 0.11 0.14 0.18 0.04 -0.01 0.06 0.09 -0.02 -0.02 0.07 0.05 0.01 0.03 0.02 0.02 0.01 ]
G [ 0.03 0.03 0.01 0.01 0.02 0.04 0.06 0.08 -0.01 0.15 -0.02 -0.02 0.02 -0.04 -0.02 0.01 0.07 0.13 -0.01 0.19 0.12 0.00 0.05 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.05 -0.05 -0.07 0.05 -0.04 0.09 -0.01 -0.03 0.04 -0.03 -0.00 0.02 -0.02 -0.02 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1211

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 621

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 556

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 515

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 443

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 289

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 140

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages