Detailed information of deep learning profile BP000380.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000380.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR799TJD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.17 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4015 3436 3244 4939 6498 4439 3311 4173 3266 3775 4427 4547 4799 4785 4165 2529 3915 5075 1705 376 12384 1011 2824 15136 201 7199 973 347 496 2749 7516 1821 2501 6562 3245 5421 3941 4552 4231 3755 4734 5983 3811 4632 4870 5271 4821 4652 4715 4577 ]
C [ 4075 3090 4537 5506 3571 3277 2791 4270 7299 6197 5563 4974 4498 3900 4504 5646 3513 1865 13904 17306 747 10242 6676 464 59 133 581 179 811 12670 1074 8747 5872 4300 3592 3233 3078 4864 5922 6993 5692 3619 4872 4081 4003 3932 3964 4177 4437 4501 ]
G [ 4460 6291 6030 3255 4262 4239 3823 3908 2771 3094 3835 4079 3830 3575 4268 2646 6050 7604 1113 91 2416 6109 1335 1384 17512 10380 9957 17087 15021 755 8317 5516 1913 4999 4708 3836 7572 4717 4169 2563 2773 4683 4689 4807 4526 3929 3986 4916 4743 4680 ]
T [ 5327 5060 4066 4177 3546 5922 7952 5526 4541 4811 4052 4277 4750 5617 4940 7056 4399 3333 1155 104 2330 515 7042 893 105 165 6366 264 1549 1703 970 1793 7591 2016 6332 5387 3286 3744 3555 4566 4678 3592 4505 4357 4478 4745 5106 4132 3982 4119 ]

Hypothetical CWM

   
A [ -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.06 0.06 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.05 0.03 -0.01 0.11 0.18 -0.04 0.11 0.05 -0.01 -0.02 -0.07 -0.01 -0.04 -0.04 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 -0.00 0.04 0.05 -0.03 -0.02 0.08 0.05 -0.02 0.03 0.17 0.14 0.10 0.17 0.13 -0.02 0.13 0.05 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.06 0.05 -0.05 -0.04 -0.09 0.02 -0.05 0.01 -0.03 -0.07 -0.02 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 440

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 380

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 153

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages