Detailed information of deep learning profile BP000030.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in H54 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000030.1
Cell line/tissue: H54
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.08 0.06 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5439 4929 4731 6230 7274 5829 4701 5438 4588 5025 5622 5833 5645 5856 5215 3894 5244 6260 2755 1172 13721 2226 4123 17347 452 7872 2416 514 927 4055 8538 2418 3654 7780 4184 6456 4957 6018 5245 5254 5709 6809 5232 5928 6167 6221 5990 5990 5844 5826 ]
C [ 5452 4664 5977 6724 5298 4942 4596 5760 8490 7685 7006 6302 6205 5784 6443 7642 5244 3128 16461 21032 2055 11376 8389 738 125 193 861 184 1512 15785 1940 11698 7578 5591 4949 4729 4794 6107 6989 8059 6951 5292 6068 5650 5384 5597 5781 5667 5859 5785 ]
G [ 5985 7445 7254 4905 5539 5553 5460 5471 4453 4664 5224 5634 5610 4959 5723 3958 7160 9418 2157 662 3112 8619 2546 3050 22420 14880 12884 22165 18952 1236 11247 6236 2490 6836 5980 5256 9166 6175 6353 4384 4667 6120 6453 6172 6228 5731 5656 6199 6390 6135 ]
T [ 6450 6288 5364 5467 5215 7002 8569 6657 5795 5952 5474 5557 5866 6727 5945 7832 5678 4520 1953 460 4438 1105 8268 2191 329 381 7165 463 1935 2250 1601 2974 9604 3119 8213 6885 4409 5026 4739 5629 5999 5105 5573 5576 5547 5777 5899 5470 5233 5580 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.01 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.04 0.05 -0.06 -0.06 -0.05 -0.02 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.04 -0.00 0.12 0.18 -0.00 0.12 0.05 0.00 -0.02 -0.05 0.00 -0.03 -0.02 0.14 0.00 0.08 0.05 0.04 0.02 0.02 0.02 0.02 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.04 0.06 -0.02 -0.02 0.07 0.06 -0.00 0.03 0.18 0.13 0.11 0.18 0.13 -0.01 0.13 0.05 -0.00 0.03 0.03 0.01 0.05 0.02 0.02 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.02 -0.05 0.05 -0.02 -0.03 -0.07 0.02 -0.03 0.00 -0.02 -0.05 -0.01 0.04 -0.03 0.03 0.01 -0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 249

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
BP000061.1 CTCF ENCSR000DPV AG10803 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages