Detailed information of deep learning profile BP000030.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in H54 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000030.1
Cell line/tissue: H54
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.06 0.08 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5580 5233 5470 5899 5777 5547 5576 5573 5105 5999 5629 4739 5026 4409 6885 8213 3119 9604 2974 1601 2250 1935 463 7165 381 329 2191 8268 1105 4438 460 1953 4520 5678 7832 5945 6727 5866 5557 5474 5952 5795 6657 8569 7002 5215 5467 5364 6288 6450 ]
C [ 6135 6390 6199 5656 5731 6228 6172 6453 6120 4667 4384 6353 6175 9166 5256 5980 6836 2490 6236 11247 1236 18952 22165 12884 14880 22420 3050 2546 8619 3112 662 2157 9418 7160 3958 5723 4959 5610 5634 5224 4664 4453 5471 5460 5553 5539 4905 7254 7445 5985 ]
G [ 5785 5859 5667 5781 5597 5384 5650 6068 5292 6951 8059 6989 6107 4794 4729 4949 5591 7578 11698 1940 15785 1512 184 861 193 125 738 8389 11376 2055 21032 16461 3128 5244 7642 6443 5784 6205 6302 7006 7685 8490 5760 4596 4942 5298 6724 5977 4664 5452 ]
T [ 5826 5844 5990 5990 6221 6167 5928 5232 6809 5709 5254 5245 6018 4957 6456 4184 7780 3654 2418 8538 4055 927 514 2416 7872 452 17347 4123 2226 13721 1172 2755 6260 5244 3894 5215 5856 5645 5833 5622 5025 4588 5438 4701 5829 7274 6230 4731 4929 5439 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.01 0.01 0.03 -0.03 0.04 -0.01 -0.05 -0.02 0.00 -0.03 0.02 -0.07 -0.03 -0.02 0.05 -0.05 -0.02 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.02 0.02 0.05 0.01 0.03 0.03 -0.00 0.05 0.13 -0.01 0.13 0.18 0.11 0.13 0.18 0.03 -0.00 0.06 0.07 -0.02 -0.02 0.06 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.02 0.02 0.02 0.02 0.04 0.05 0.08 0.00 0.14 -0.02 -0.03 0.00 -0.05 -0.02 0.00 0.05 0.12 -0.00 0.18 0.12 -0.00 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.02 -0.05 -0.06 -0.06 0.05 -0.04 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.01 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 249

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages