Detailed information of deep learning profile BP000018.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000018.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.20 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.12 -0.00 0.05 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.09 0.07 0.20 0.14 -0.00 0.08 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4010 5158 6307 4936 3902 4709 3860 4159 4792 4786 4867 5000 4557 3234 4369 5321 2401 1032 11522 1912 3294 15369 352 6704 1767 365 583 3159 7026 1951 2913 6699 3409 5406 4103 5213 4513 4320 4982 5710 4353 5048 5156 5176 4973 5225 4911 4930 5028 4916 ]
C [ 4959 5747 4458 4221 3740 4927 7309 6608 5909 5513 5139 4948 5340 6369 4470 2543 14038 17698 1717 9497 7311 534 105 144 745 169 702 14101 1280 10648 6519 4739 4337 3908 3884 5121 5811 6880 5846 4671 5335 4724 4576 4748 5009 4788 4964 4954 4896 5133 ]
G [ 6313 4173 4655 4679 4670 4482 3753 3981 4490 4849 4866 4353 4877 3490 6170 8136 1841 650 2891 7510 2090 2232 19133 12701 10884 18901 16974 711 10118 4994 1898 5808 5035 4374 8106 5219 5497 3750 3919 5213 5386 5297 5418 4848 4877 5171 5476 5387 5140 5239 ]
T [ 4521 4725 4383 5967 7491 5685 4881 5055 4612 4655 4931 5502 5029 6710 4794 3803 1523 423 3673 884 7108 1668 213 254 6407 368 1544 1832 1379 2210 8473 2557 7022 6115 3710 4250 3982 4853 5056 4209 4729 4734 4653 5031 4944 4619 4452 4532 4739 4515 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.03 -0.02 0.03 -0.01 -0.04 0.05 -0.03 -0.02 0.11 -0.07 0.06 -0.08 -0.06 -0.07 -0.02 0.03 -0.03 -0.02 0.04 -0.03 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.06 0.03 -0.01 0.14 0.21 -0.03 0.14 0.06 -0.01 -0.03 -0.07 -0.01 -0.05 -0.04 0.17 -0.03 0.09 0.05 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.04 0.06 -0.03 -0.03 0.08 0.06 -0.01 0.03 0.22 0.16 0.13 0.21 0.16 -0.03 0.16 0.05 -0.02 0.03 0.02 -0.00 0.04 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.03 -0.00 -0.02 -0.04 -0.09 -0.02 -0.07 0.08 -0.03 -0.04 -0.08 0.04 -0.05 0.01 -0.03 -0.07 -0.02 0.04 -0.05 0.04 0.02 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1365

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 160

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
BP000061.1 CTCF ENCSR000DPV AG10803 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages