Detailed information of deep learning profile BP000018.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000018.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.08 -0.00 0.14 0.20 0.07 0.09 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.05 -0.00 0.12 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.20 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4515 4739 4532 4452 4619 4944 5031 4653 4734 4729 4209 5056 4853 3982 4250 3710 6115 7022 2557 8473 2210 1379 1832 1544 368 6407 254 213 1668 7108 884 3673 423 1523 3803 4794 6710 5029 5502 4931 4655 4612 5055 4881 5685 7491 5967 4383 4725 4521 ]
C [ 5239 5140 5387 5476 5171 4877 4848 5418 5297 5386 5213 3919 3750 5497 5219 8106 4374 5035 5808 1898 4994 10118 711 16974 18901 10884 12701 19133 2232 2090 7510 2891 650 1841 8136 6170 3490 4877 4353 4866 4849 4490 3981 3753 4482 4670 4679 4655 4173 6313 ]
G [ 5133 4896 4954 4964 4788 5009 4748 4576 4724 5335 4671 5846 6880 5811 5121 3884 3908 4337 4739 6519 10648 1280 14101 702 169 745 144 105 534 7311 9497 1717 17698 14038 2543 4470 6369 5340 4948 5139 5513 5909 6608 7309 4927 3740 4221 4458 5747 4959 ]
T [ 4916 5028 4930 4911 5225 4973 5176 5156 5048 4353 5710 4982 4320 4513 5213 4103 5406 3409 6699 2913 1951 7026 3159 583 365 1767 6704 352 15369 3294 1912 11522 1032 2401 5321 4369 3234 4557 5000 4867 4786 4792 4159 3860 4709 3902 4936 6307 5158 4010 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.02 0.04 -0.05 0.04 -0.02 -0.07 -0.03 0.01 -0.05 0.04 -0.08 -0.04 -0.03 0.08 -0.07 -0.02 -0.09 -0.04 -0.02 -0.00 0.03 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.04 -0.00 0.02 0.03 -0.02 0.05 0.16 -0.03 0.16 0.21 0.13 0.16 0.22 0.03 -0.01 0.06 0.08 -0.03 -0.03 0.06 0.04 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.05 0.09 -0.03 0.17 -0.04 -0.05 -0.01 -0.07 -0.03 -0.01 0.06 0.14 -0.03 0.21 0.14 -0.01 0.03 0.06 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.03 0.04 -0.02 -0.03 0.03 -0.02 -0.07 -0.06 -0.08 0.06 -0.07 0.11 -0.02 -0.03 0.05 -0.04 -0.01 0.03 -0.02 -0.03 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1365

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 160

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages