Detailed information of deep learning profile BP001207.1

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This page shows detailed deep learning-derived predictions and motifs for POU5F1 in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: POU5F1
Model ID: BP001207.1
Cell line/tissue: GM23338
Class: Homeo domain factors
Family: POU domain factors
JASPAR ID: MA1115.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q01860  
Source: ENCSR264RJX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 0.00 0.04 -0.00 0.00 0.01 -0.00 0.04 0.04 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.03 0.02 0.02 -0.00 -0.00 -0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2369 2515 2337 2497 2241 2366 2235 2309 2594 2752 2477 2508 2560 2381 2209 1965 2445 2839 5128 554 870 2042 2178 1173 8022 839 3415 4436 753 7151 7366 4154 3146 2357 2797 2592 2239 2170 2140 2424 2239 2318 2291 2382 2437 2418 2324 2234 2297 2329 ]
C [ 1946 1704 1794 1911 2105 1885 2054 1909 1742 1484 1598 1624 1740 1930 2163 1863 1759 2466 905 485 1388 227 621 7088 130 346 1017 400 4343 343 273 463 653 1483 2112 1876 1989 2151 2099 1992 1731 1693 1826 1728 1723 1798 1876 1801 1910 2042 ]
G [ 1781 1928 2119 1850 1645 1740 1807 1722 1723 1925 2055 2108 2109 2221 1930 1942 1639 1309 842 321 334 172 5378 43 74 77 1657 273 2026 94 386 497 3608 3851 2147 1841 1880 1790 2015 1752 1756 1722 1910 1971 2014 2130 1935 1940 1891 1727 ]
T [ 2299 2248 2145 2137 2404 2404 2299 2455 2336 2234 2265 2155 1986 1863 2093 2625 2552 1781 1520 7035 5803 5954 218 91 169 7133 2306 3286 1273 807 370 3281 988 704 1339 2086 2287 2284 2141 2227 2669 2662 2368 2314 2221 2049 2260 2420 2297 2297 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.01 -0.01 0.01 0.01 0.01 0.04 -0.00 0.01 0.02 -0.01 0.04 0.04 0.01 0.01 0.00 0.00 -0.00 -0.01 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.00 -0.00 0.00 -0.00 -0.00 0.05 -0.02 -0.00 -0.01 -0.00 0.03 -0.02 -0.01 -0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 -0.00 -0.02 -0.02 -0.02 0.04 -0.02 -0.00 -0.03 0.01 -0.02 0.01 -0.02 -0.00 -0.01 0.02 0.03 0.01 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.00 -0.00 -0.00 0.03 0.03 0.02 -0.02 -0.02 -0.02 0.04 0.01 0.01 -0.00 -0.01 -0.02 0.02 -0.01 -0.02 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 259

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 112

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 35

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 20

CWM

PFM

     

HCWM

2 profiles found for the same TF (POU5F1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001206.1 POU5F1 ENCSR000BMU H1 Homo sapiens MA1115.2
BP001208.1 POU5F1 ENCSR362VCG bipolar neuron Homo sapiens MA1115.2
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