Detailed information of deep learning profile BP001207.1

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This page shows detailed deep learning-derived predictions and motifs for POU5F1 in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: POU5F1
Model ID: BP001207.1
Cell line/tissue: GM23338
Class: Homeo domain factors
Family: POU domain factors
JASPAR ID: MA1115.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q01860  
Source: ENCSR264RJX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 0.02 0.02 0.03 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.04 0.04 -0.00 0.01 0.00 -0.00 0.04 0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2297 2297 2420 2260 2049 2221 2314 2368 2662 2669 2227 2141 2284 2287 2086 1339 704 988 3281 370 807 1273 3286 2306 7133 169 91 218 5954 5803 7035 1520 1781 2552 2625 2093 1863 1986 2155 2265 2234 2336 2455 2299 2404 2404 2137 2145 2248 2299 ]
C [ 1727 1891 1940 1935 2130 2014 1971 1910 1722 1756 1752 2015 1790 1880 1841 2147 3851 3608 497 386 94 2026 273 1657 77 74 43 5378 172 334 321 842 1309 1639 1942 1930 2221 2109 2108 2055 1925 1723 1722 1807 1740 1645 1850 2119 1928 1781 ]
G [ 2042 1910 1801 1876 1798 1723 1728 1826 1693 1731 1992 2099 2151 1989 1876 2112 1483 653 463 273 343 4343 400 1017 346 130 7088 621 227 1388 485 905 2466 1759 1863 2163 1930 1740 1624 1598 1484 1742 1909 2054 1885 2105 1911 1794 1704 1946 ]
T [ 2329 2297 2234 2324 2418 2437 2382 2291 2318 2239 2424 2140 2170 2239 2592 2797 2357 3146 4154 7366 7151 753 4436 3415 839 8022 1173 2178 2042 870 554 5128 2839 2445 1965 2209 2381 2560 2508 2477 2752 2594 2309 2235 2366 2241 2497 2337 2515 2369 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.02 -0.01 0.02 -0.02 -0.01 -0.00 0.01 0.01 0.04 -0.02 -0.02 -0.02 0.02 0.03 0.03 -0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.03 0.02 -0.01 -0.00 -0.02 0.01 -0.02 0.01 -0.03 -0.00 -0.02 0.04 -0.02 -0.02 -0.02 -0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.01 -0.01 -0.02 0.03 -0.00 -0.01 -0.00 -0.02 0.05 -0.00 -0.00 0.00 -0.00 0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.01 -0.00 0.00 0.00 0.01 0.01 0.04 0.04 -0.01 0.02 0.01 -0.00 0.04 0.01 0.01 0.01 -0.01 -0.01 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 259

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 112

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 35

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 20

CWM

PFM

     

HCWM

2 profiles found for the same TF (POU5F1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001206.1 POU5F1 ENCSR000BMU H1 Homo sapiens MA1115.2
BP001208.1 POU5F1 ENCSR362VCG bipolar neuron Homo sapiens MA1115.2
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