Detailed information of deep learning profile BP001181.1

  1. Home
  2. Deep Learning Profile > BP001181.1
This page shows detailed deep learning-derived predictions and motifs for CLOCK in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP001181.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
JASPAR ID: MA0819.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR934JDG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.02 -0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.03 -0.00 0.02 -0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 634 553 631 558 648 606 682 514 631 499 533 506 612 528 904 491 472 77 2945 0 154 59 5 304 640 506 654 475 621 483 861 527 564 483 542 509 651 537 626 548 662 554 608 525 580 528 594 558 600 585 ]
C [ 857 848 821 886 849 870 879 937 828 834 896 954 865 954 650 639 328 2917 7 2986 40 148 10 737 1019 1166 786 941 792 1217 890 961 744 862 749 947 912 934 862 1003 812 896 833 916 826 904 898 880 844 932 ]
G [ 932 903 990 880 985 871 871 902 905 968 1056 813 997 876 976 1404 922 7 37 3 2801 37 2787 1027 835 617 1073 889 1078 781 763 845 1213 801 1160 900 864 859 982 823 928 909 981 861 1014 848 913 878 967 847 ]
T [ 583 702 564 682 524 659 574 653 642 705 521 733 532 648 476 472 1284 5 17 17 11 2762 204 938 512 717 493 701 515 525 492 673 485 860 555 650 579 676 536 632 604 647 584 704 586 726 601 690 595 642 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.00 0.00 0.02 -0.02 -0.00 -0.01 -0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.02 -0.01 0.03 -0.01 0.00 -0.02 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 -0.02 0.00 -0.01 0.03 -0.01 0.02 -0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 -0.02 0.02 0.00 0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 174

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 86

CWM

PFM

     

HCWM

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001179.1 CLOCK ENCSR228OQM K562 Homo sapiens MA0819.3
BP001180.1 CLOCK ENCSR699YFX MCF-7 Homo sapiens MA0819.3
Showing 2 profiles of page 1 from 1 pages
  • 1 (current)