Detailed information of deep learning profile BP001180.1

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This page shows detailed deep learning-derived predictions and motifs for CLOCK in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP001180.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
JASPAR ID: MA0819.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR699YFX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.04 -0.00 0.05 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.04 -0.00 0.04 -0.00 0.00 -0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 -0.00 0.03 0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 539 494 572 493 589 474 616 481 571 491 545 468 594 477 572 438 726 423 580 430 424 414 577 422 774 429 453 34 2595 1 107 49 0 272 536 477 568 412 565 515 609 519 526 482 538 424 550 489 589 485 ]
C [ 763 869 747 860 744 880 746 828 755 827 743 816 729 825 781 1042 696 1010 752 754 743 899 748 896 583 638 317 2595 4 2576 69 68 5 759 1026 992 713 832 769 870 843 739 729 785 762 897 762 829 735 877 ]
G [ 842 746 804 770 794 745 751 756 815 725 874 758 827 795 816 719 754 694 871 803 1086 725 840 794 909 1166 700 6 19 20 2460 20 2463 932 608 570 906 806 876 789 721 845 883 802 808 799 813 770 835 746 ]
T [ 493 528 514 514 510 538 524 572 496 594 475 595 487 540 468 438 461 510 434 650 384 599 472 525 371 404 1167 2 19 40 1 2500 169 674 467 598 450 587 427 463 464 534 499 568 529 517 512 549 478 529 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.01 0.03 -0.03 -0.00 -0.01 -0.03 0.01 0.00 0.00 0.00 ]
C [ 0.01 0.00 0.00 -0.00 0.04 -0.03 0.05 -0.02 0.01 -0.03 0.00 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.00 -0.03 0.01 -0.02 0.04 -0.03 0.04 -0.00 0.00 0.00 0.01 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 -0.01 -0.00 -0.03 0.03 0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 638

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 354

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 200

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 135

CWM

PFM

     

HCWM

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001179.1 CLOCK ENCSR228OQM K562 Homo sapiens MA0819.3
BP001181.1 CLOCK ENCSR934JDG MCF-7 Homo sapiens MA0819.3
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