Detailed information of deep learning profile BP001181.1

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This page shows detailed deep learning-derived predictions and motifs for CLOCK in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP001181.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
JASPAR ID: MA0819.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR934JDG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.02 -0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.03 -0.00 0.02 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 642 595 690 601 726 586 704 584 647 604 632 536 676 579 650 555 860 485 673 492 525 515 701 493 717 512 938 204 2762 11 17 17 5 1284 472 476 648 532 733 521 705 642 653 574 659 524 682 564 702 583 ]
C [ 847 967 878 913 848 1014 861 981 909 928 823 982 859 864 900 1160 801 1213 845 763 781 1078 889 1073 617 835 1027 2787 37 2801 3 37 7 922 1404 976 876 997 813 1056 968 905 902 871 871 985 880 990 903 932 ]
G [ 932 844 880 898 904 826 916 833 896 812 1003 862 934 912 947 749 862 744 961 890 1217 792 941 786 1166 1019 737 10 148 40 2986 7 2917 328 639 650 954 865 954 896 834 828 937 879 870 849 886 821 848 857 ]
T [ 585 600 558 594 528 580 525 608 554 662 548 626 537 651 509 542 483 564 527 861 483 621 475 654 506 640 304 5 59 154 0 2945 77 472 491 904 528 612 506 533 499 631 514 682 606 648 558 631 553 634 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 0.00 0.00 0.02 -0.02 -0.00 -0.01 -0.01 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.02 -0.01 0.03 -0.01 0.00 -0.02 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 -0.02 0.00 -0.01 0.03 -0.01 0.02 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 -0.02 0.02 0.00 0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 174

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 86

CWM

PFM

     

HCWM

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001179.1 CLOCK ENCSR228OQM K562 Homo sapiens MA0819.3
BP001180.1 CLOCK ENCSR699YFX MCF-7 Homo sapiens MA0819.3
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