Detailed information of deep learning profile BP001179.1

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This page shows detailed deep learning-derived predictions and motifs for CLOCK in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP001179.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
JASPAR ID: MA0819.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR228OQM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 0.00 0.02 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.02 -0.00 0.02 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.02 -0.00 0.02 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 181 188 186 185 183 203 169 187 212 180 145 214 182 199 165 137 134 161 147 250 196 156 32 994 1 39 38 16 124 149 160 160 138 141 147 183 182 176 189 169 154 181 162 206 183 180 159 187 165 150 ]
C [ 325 322 341 320 333 317 334 332 315 294 389 343 371 322 337 310 366 353 352 264 230 154 963 2 970 0 146 9 244 494 393 312 370 332 311 354 326 281 313 333 359 342 339 314 356 314 350 295 294 309 ]
G [ 323 326 298 323 302 327 310 322 293 355 303 293 279 350 304 375 352 281 324 348 457 220 7 11 1 969 13 952 403 208 248 374 306 358 391 297 334 343 312 330 313 307 312 303 282 317 301 317 340 369 ]
T [ 184 177 188 185 195 166 200 172 193 184 176 163 181 142 207 191 161 218 190 151 130 483 11 6 41 5 816 36 242 162 212 167 199 182 164 179 171 213 199 181 187 183 200 190 192 202 203 214 214 185 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.01 0.00 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.02 -0.02 0.02 -0.03 0.00 -0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.02 0.00 -0.03 0.02 -0.02 0.02 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.01 -0.01 0.00 -0.01 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 202

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 71

CWM

PFM

     

HCWM

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001180.1 CLOCK ENCSR699YFX MCF-7 Homo sapiens MA0819.3
BP001181.1 CLOCK ENCSR934JDG MCF-7 Homo sapiens MA0819.3
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