Detailed information of deep learning profile BP001180.1

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This page shows detailed deep learning-derived predictions and motifs for CLOCK in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP001180.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
JASPAR ID: MA0819.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR699YFX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.00 0.03 -0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.04 -0.00 0.04 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.05 -0.00 0.04 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 529 478 549 512 517 529 568 499 534 464 463 427 587 450 598 467 674 169 2500 1 40 19 2 1167 404 371 525 472 599 384 650 434 510 461 438 468 540 487 595 475 594 496 572 524 538 510 514 514 528 493 ]
C [ 746 835 770 813 799 808 802 883 845 721 789 876 806 906 570 608 932 2463 20 2460 20 19 6 700 1166 909 794 840 725 1086 803 871 694 754 719 816 795 827 758 874 725 815 756 751 745 794 770 804 746 842 ]
G [ 877 735 829 762 897 762 785 729 739 843 870 769 832 713 992 1026 759 5 68 69 2576 4 2595 317 638 583 896 748 899 743 754 752 1010 696 1042 781 825 729 816 743 827 755 828 746 880 744 860 747 869 763 ]
T [ 485 589 489 550 424 538 482 526 519 609 515 565 412 568 477 536 272 0 49 107 1 2595 34 453 429 774 422 577 414 424 430 580 423 726 438 572 477 594 468 545 491 571 481 616 474 589 493 572 494 539 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.01 0.03 -0.03 -0.00 -0.01 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.01 0.00 0.00 -0.00 0.04 -0.03 0.04 -0.02 0.01 -0.03 0.00 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.00 -0.03 0.01 -0.02 0.05 -0.03 0.04 -0.00 0.00 0.00 0.01 ]
T [ 0.00 0.00 0.00 0.01 -0.03 -0.01 -0.00 -0.03 0.03 0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 638

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 354

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 200

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 135

CWM

PFM

     

HCWM

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001179.1 CLOCK ENCSR228OQM K562 Homo sapiens MA0819.3
BP001181.1 CLOCK ENCSR934JDG MCF-7 Homo sapiens MA0819.3
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