Detailed information of deep learning profile BP001179.1

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This page shows detailed deep learning-derived predictions and motifs for CLOCK in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP001179.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
JASPAR ID: MA0819.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR228OQM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.02 -0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.02 -0.00 0.02 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.02 0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 185 214 214 203 202 192 190 200 183 187 181 199 213 171 179 164 182 199 167 212 162 242 36 816 5 41 6 11 483 130 151 190 218 161 191 207 142 181 163 176 184 193 172 200 166 195 185 188 177 184 ]
C [ 369 340 317 301 317 282 303 312 307 313 330 312 343 334 297 391 358 306 374 248 208 403 952 13 969 1 11 7 220 457 348 324 281 352 375 304 350 279 293 303 355 293 322 310 327 302 323 298 326 323 ]
G [ 309 294 295 350 314 356 314 339 342 359 333 313 281 326 354 311 332 370 312 393 494 244 9 146 0 970 2 963 154 230 264 352 353 366 310 337 322 371 343 389 294 315 332 334 317 333 320 341 322 325 ]
T [ 150 165 187 159 180 183 206 162 181 154 169 189 176 182 183 147 141 138 160 160 149 124 16 38 39 1 994 32 156 196 250 147 161 134 137 165 199 182 214 145 180 212 187 169 203 183 185 186 188 181 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.01 0.00 -0.01 -0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.02 -0.02 0.02 -0.03 0.00 -0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.01 0.00 -0.03 0.02 -0.02 0.02 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.00 -0.01 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 202

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 71

CWM

PFM

     

HCWM

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001180.1 CLOCK ENCSR699YFX MCF-7 Homo sapiens MA0819.3
BP001181.1 CLOCK ENCSR934JDG MCF-7 Homo sapiens MA0819.3
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