Detailed information of deep learning profile BP001173.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4G in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4G
Model ID: BP001173.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0484.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q14541  
Source: ENCSR793EHQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.03 0.03 -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.03 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.03 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.05 0.01 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 2326 2256 2228 2212 2217 2243 2474 2289 2251 2240 2274 2401 2426 2244 2186 2070 2159 2876 2520 3909 789 1819 1323 182 8462 7448 7810 34 444 447 343 6163 2108 2298 1835 1908 1974 2174 2129 2256 2333 2346 2273 2434 2235 2282 2217 2347 2293 2267 ]
C [ 2303 2384 2286 2383 2379 2448 2292 2357 2345 2340 2308 2332 2186 2219 2500 2715 2997 2273 2002 435 187 858 2872 8178 217 147 43 17 172 4221 7631 890 2475 2214 2249 2340 2620 2432 2431 2334 2346 2408 2411 2260 2336 2244 2384 2445 2323 2344 ]
G [ 2464 2523 2604 2543 2463 2453 2403 2466 2420 2454 2517 2387 2593 2667 2600 2423 1987 2102 3454 3699 7693 3452 2234 174 436 1420 1240 9162 3152 993 224 1150 2927 2511 2695 2449 2525 2489 2500 2436 2527 2396 2504 2520 2547 2624 2550 2366 2434 2467 ]
T [ 2142 2072 2117 2097 2176 2091 2066 2123 2219 2201 2136 2115 2030 2105 1949 2027 2092 1984 1259 1192 566 3106 2806 701 120 220 142 22 5467 3574 1037 1032 1725 2212 2456 2538 2116 2140 2175 2209 2029 2085 2047 2021 2117 2085 2084 2077 2185 2157 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.01 -0.02 0.03 0.03 0.03 -0.02 -0.01 -0.01 -0.02 0.02 0.00 0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.00 -0.01 -0.00 0.01 0.04 -0.02 -0.02 -0.01 -0.01 -0.02 0.02 0.04 -0.01 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.03 0.01 0.00 -0.01 0.01 0.00 0.00 0.05 0.02 -0.00 -0.02 0.01 0.00 0.00 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 0.01 0.01 0.01 -0.02 -0.01 -0.02 -0.02 0.03 0.02 0.01 -0.01 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 311

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 34

CWM

PFM

     

HCWM

2 profiles found for the same TF (HNF4G) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001171.1 HNF4G ENCSR000BNJ HepG2 Homo sapiens MA0484.3
BP001172.1 HNF4G ENCSR297GII liver Homo sapiens MA0484.3
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