Detailed information of deep learning profile BP001172.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4G in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4G
Model ID: BP001172.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0484.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q14541  
Source: ENCSR297GII
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.00 0.01 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.07 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.04 0.01 0.00 -0.00 -0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.04 0.04 0.04 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 4464 4495 4552 4498 4556 4473 4410 4346 4472 4473 4430 4608 4717 4615 4638 5674 5474 4882 3847 2212 2611 6405 11436 41 382 468 249 1598 5142 6445 1800 2316 2724 4174 4206 4265 4151 4238 4146 4588 4841 4736 4552 4433 4286 4386 4433 4482 4609 4467 ]
C [ 4251 4281 4206 4164 4139 4218 4346 4397 4228 4249 4222 4294 4234 4101 4488 4292 4645 4136 4801 2040 372 1846 5232 17418 1759 2274 707 364 3877 6829 13269 6746 5829 3206 3244 3987 4557 4602 4676 4253 4148 3953 4061 4208 4325 4339 4233 4334 4457 4188 ]
G [ 4262 4176 4069 4094 4069 4126 4171 4046 4153 4144 4014 4002 4204 4518 4504 3778 3730 3505 4190 1593 14045 8296 141 23 42 385 326 15215 5914 1260 577 814 3578 4074 5744 5239 4446 3853 3822 3936 4105 4249 4409 4191 4132 3888 4079 4148 3943 4242 ]
T [ 4595 4620 4745 4816 4808 4755 4645 4783 4719 4706 4906 4668 4417 4338 3942 3828 3723 5049 4734 11727 544 1025 763 90 15389 14445 16290 395 2639 3038 1926 7696 5441 6118 4378 4081 4418 4879 4928 4795 4478 4634 4550 4740 4829 4959 4827 4608 4563 4675 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.01 0.01 0.02 0.04 -0.01 -0.02 -0.00 -0.02 0.01 0.01 0.02 -0.00 -0.01 -0.01 -0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.00 0.02 -0.01 -0.00 0.03 0.07 0.02 0.01 0.02 -0.01 0.01 0.02 0.05 0.02 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.05 0.03 -0.03 -0.01 -0.01 -0.02 -0.01 0.05 0.03 -0.01 -0.02 -0.00 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.01 0.02 -0.02 -0.01 -0.02 -0.01 0.04 0.04 0.04 -0.02 -0.00 -0.00 -0.00 0.01 0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 800

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 628

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 519

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 203

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 201

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 48

CWM

PFM

     

HCWM

2 profiles found for the same TF (HNF4G) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001171.1 HNF4G ENCSR000BNJ HepG2 Homo sapiens MA0484.3
BP001173.1 HNF4G ENCSR793EHQ HepG2 Homo sapiens MA0484.3
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