Detailed information of deep learning profile BP001173.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4G in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4G
Model ID: BP001173.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0484.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q14541  
Source: ENCSR793EHQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.05 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.03 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.03 0.03 0.03 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2157 2185 2077 2084 2085 2117 2021 2047 2085 2029 2209 2175 2140 2116 2538 2456 2212 1725 1032 1037 3574 5467 22 142 220 120 701 2806 3106 566 1192 1259 1984 2092 2027 1949 2105 2030 2115 2136 2201 2219 2123 2066 2091 2176 2097 2117 2072 2142 ]
C [ 2467 2434 2366 2550 2624 2547 2520 2504 2396 2527 2436 2500 2489 2525 2449 2695 2511 2927 1150 224 993 3152 9162 1240 1420 436 174 2234 3452 7693 3699 3454 2102 1987 2423 2600 2667 2593 2387 2517 2454 2420 2466 2403 2453 2463 2543 2604 2523 2464 ]
G [ 2344 2323 2445 2384 2244 2336 2260 2411 2408 2346 2334 2431 2432 2620 2340 2249 2214 2475 890 7631 4221 172 17 43 147 217 8178 2872 858 187 435 2002 2273 2997 2715 2500 2219 2186 2332 2308 2340 2345 2357 2292 2448 2379 2383 2286 2384 2303 ]
T [ 2267 2293 2347 2217 2282 2235 2434 2273 2346 2333 2256 2129 2174 1974 1908 1835 2298 2108 6163 343 447 444 34 7810 7448 8462 182 1323 1819 789 3909 2520 2876 2159 2070 2186 2244 2426 2401 2274 2240 2251 2289 2474 2243 2217 2212 2228 2256 2326 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.01 0.01 0.02 0.03 -0.02 -0.02 -0.01 -0.02 0.01 0.01 0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.00 0.01 -0.02 -0.00 0.02 0.05 0.00 0.00 0.01 -0.01 0.00 0.01 0.03 0.01 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.01 0.04 0.02 -0.02 -0.01 -0.01 -0.02 -0.02 0.04 0.01 -0.00 -0.01 0.00 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.01 0.00 0.00 0.02 -0.02 -0.01 -0.01 -0.02 0.03 0.03 0.03 -0.02 -0.01 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 311

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 34

CWM

PFM

     

HCWM

2 profiles found for the same TF (HNF4G) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001171.1 HNF4G ENCSR000BNJ HepG2 Homo sapiens MA0484.3
BP001172.1 HNF4G ENCSR297GII liver Homo sapiens MA0484.3
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