Detailed information of deep learning profile BP001171.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4G in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4G
Model ID: BP001171.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0484.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q14541  
Source: ENCSR000BNJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.03 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.08 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.04 0.01 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.05 0.05 0.05 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 5004 5033 5238 5088 5104 5013 4998 4866 4924 5034 4997 5123 5266 5180 5320 6266 5927 5056 4089 2430 2715 8696 12217 22 302 511 206 1861 6675 7729 1739 2734 3096 4742 5133 4877 4805 4832 4751 4983 5267 5151 5125 5103 4978 5012 5028 4951 5029 4974 ]
C [ 5483 5373 5418 5298 5449 5627 5517 5485 5476 5321 5342 5427 5414 5347 5480 5401 6003 5484 6183 2557 568 2327 7609 20927 2392 2863 938 460 4576 7322 16710 8330 7538 4504 4313 5260 5742 5915 5751 5552 5387 5359 5280 5312 5357 5508 5371 5647 5745 5429 ]
G [ 5147 5294 5088 5191 5168 5048 5145 5078 5237 5254 5059 5180 5219 5414 5694 4926 4767 4626 5424 1908 17070 8905 261 24 64 324 451 18214 6713 2044 645 1059 4289 4830 6565 5947 5388 4817 4842 4988 4978 5167 5258 5246 5082 5132 5157 5175 4989 5228 ]
T [ 5438 5372 5328 5495 5351 5384 5412 5643 5435 5463 5674 5342 5173 5131 4578 4479 4375 5906 5376 14177 719 1144 985 99 18314 17374 19477 537 3108 3977 1978 8949 6149 6996 5061 4988 5137 5508 5728 5549 5440 5395 5409 5411 5655 5420 5516 5299 5309 5441 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 0.01 0.03 0.05 -0.02 -0.03 -0.01 -0.03 0.01 0.02 0.02 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.00 0.02 -0.02 -0.00 0.03 0.08 0.01 0.00 0.02 -0.02 0.00 0.02 0.06 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.06 0.03 -0.04 -0.01 -0.02 -0.03 -0.03 0.06 0.02 -0.01 -0.02 -0.00 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.01 0.00 0.01 0.03 -0.03 -0.01 -0.01 -0.02 0.05 0.06 0.06 -0.03 -0.01 0.00 -0.00 0.01 0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2683

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1943

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1591

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 552

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 472

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 337

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 60

CWM

PFM

     

HCWM

2 profiles found for the same TF (HNF4G) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001172.1 HNF4G ENCSR297GII liver Homo sapiens MA0484.3
BP001173.1 HNF4G ENCSR793EHQ HepG2 Homo sapiens MA0484.3
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