Detailed information of deep learning profile BP001172.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4G in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4G
Model ID: BP001172.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0484.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q14541  
Source: ENCSR297GII
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.04 0.04 0.04 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.00 0.00 0.00 ]
G [ -0.00 -0.00 0.00 0.01 0.04 0.01 -0.00 -0.00 0.00 -0.00 0.00 0.07 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.01 0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 4675 4563 4608 4827 4959 4829 4740 4550 4634 4478 4795 4928 4879 4418 4081 4378 6118 5441 7696 1926 3038 2639 395 16290 14445 15389 90 763 1025 544 11727 4734 5049 3723 3828 3942 4338 4417 4668 4906 4706 4719 4783 4645 4755 4808 4816 4745 4620 4595 ]
C [ 4242 3943 4148 4079 3888 4132 4191 4409 4249 4105 3936 3822 3853 4446 5239 5744 4074 3578 814 577 1260 5914 15215 326 385 42 23 141 8296 14045 1593 4190 3505 3730 3778 4504 4518 4204 4002 4014 4144 4153 4046 4171 4126 4069 4094 4069 4176 4262 ]
G [ 4188 4457 4334 4233 4339 4325 4208 4061 3953 4148 4253 4676 4602 4557 3987 3244 3206 5829 6746 13269 6829 3877 364 707 2274 1759 17418 5232 1846 372 2040 4801 4136 4645 4292 4488 4101 4234 4294 4222 4249 4228 4397 4346 4218 4139 4164 4206 4281 4251 ]
T [ 4467 4609 4482 4433 4386 4286 4433 4552 4736 4841 4588 4146 4238 4151 4265 4206 4174 2724 2316 1800 6445 5142 1598 249 468 382 41 11436 6405 2611 2212 3847 4882 5474 5674 4638 4615 4717 4608 4430 4473 4472 4346 4410 4473 4556 4498 4552 4495 4464 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.00 0.01 -0.00 -0.00 -0.00 -0.02 0.04 0.04 0.04 -0.01 -0.02 -0.01 -0.02 0.02 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 -0.00 -0.02 -0.01 0.03 0.05 -0.01 -0.02 -0.01 -0.01 -0.03 0.03 0.05 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.02 0.05 0.02 0.01 -0.01 0.02 0.01 0.02 0.07 0.03 -0.00 -0.01 0.02 0.00 0.00 0.01 0.01 ]
T [ -0.00 0.00 -0.00 -0.01 -0.01 -0.00 0.02 0.01 0.01 -0.02 -0.00 -0.02 -0.01 0.04 0.02 0.01 -0.01 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 800

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 628

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 519

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 203

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 201

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 48

CWM

PFM

     

HCWM

2 profiles found for the same TF (HNF4G) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001171.1 HNF4G ENCSR000BNJ HepG2 Homo sapiens MA0484.3
BP001173.1 HNF4G ENCSR793EHQ HepG2 Homo sapiens MA0484.3
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