Detailed information of deep learning profile BP001171.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4G in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4G
Model ID: BP001171.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0484.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q14541  
Source: ENCSR000BNJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.05 0.05 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.04 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 0.01 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5441 5309 5299 5516 5420 5655 5411 5409 5395 5440 5549 5728 5508 5137 4988 5061 6996 6149 8949 1978 3977 3108 537 19477 17374 18314 99 985 1144 719 14177 5376 5906 4375 4479 4578 5131 5173 5342 5674 5463 5435 5643 5412 5384 5351 5495 5328 5372 5438 ]
C [ 5228 4989 5175 5157 5132 5082 5246 5258 5167 4978 4988 4842 4817 5388 5947 6565 4830 4289 1059 645 2044 6713 18214 451 324 64 24 261 8905 17070 1908 5424 4626 4767 4926 5694 5414 5219 5180 5059 5254 5237 5078 5145 5048 5168 5191 5088 5294 5147 ]
G [ 5429 5745 5647 5371 5508 5357 5312 5280 5359 5387 5552 5751 5915 5742 5260 4313 4504 7538 8330 16710 7322 4576 460 938 2863 2392 20927 7609 2327 568 2557 6183 5484 6003 5401 5480 5347 5414 5427 5342 5321 5476 5485 5517 5627 5449 5298 5418 5373 5483 ]
T [ 4974 5029 4951 5028 5012 4978 5103 5125 5151 5267 4983 4751 4832 4805 4877 5133 4742 3096 2734 1739 7729 6675 1861 206 511 302 22 12217 8696 2715 2430 4089 5056 5927 6266 5320 5180 5266 5123 4997 5034 4924 4866 4998 5013 5104 5088 5238 5033 5004 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.00 0.01 -0.00 0.00 -0.01 -0.03 0.06 0.06 0.05 -0.02 -0.01 -0.01 -0.03 0.03 0.01 0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.01 -0.00 -0.02 -0.01 0.02 0.06 -0.03 -0.03 -0.02 -0.01 -0.04 0.03 0.06 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.06 0.02 0.00 -0.02 0.02 0.00 0.01 0.08 0.03 -0.00 -0.02 0.02 0.00 0.00 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 0.02 0.02 0.01 -0.03 -0.01 -0.03 -0.02 0.05 0.03 0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2683

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1943

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1591

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 552

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 472

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 337

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 60

CWM

PFM

     

HCWM

2 profiles found for the same TF (HNF4G) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001172.1 HNF4G ENCSR297GII liver Homo sapiens MA0484.3
BP001173.1 HNF4G ENCSR793EHQ HepG2 Homo sapiens MA0484.3
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