Detailed information of deep learning profile BP001166.1

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This page shows detailed deep learning-derived predictions and motifs for E2F8 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: E2F8
Model ID: BP001166.1
Cell line/tissue: GM12878
Class: Fork head/winged helix factors
Family: E2F
JASPAR ID: MA0865.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: A0AVK6  
Source: ENCSR793HVL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.00 0.01 0.01 0.03 0.00 0.02 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.01 0.01 0.02 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 226 232 232 215 227 211 226 226 256 219 210 224 260 309 304 175 51 30 18 18 0 0 0 24 500 340 262 269 193 220 208 249 235 217 216 219 200 225 223 229 223 226 215 227 248 213 234 245 225 240 ]
C [ 349 377 347 381 403 384 368 382 347 395 406 379 410 355 251 201 220 89 893 952 1150 6 1078 696 291 327 395 333 398 336 375 342 313 366 365 347 387 336 349 366 365 370 365 324 335 364 348 342 352 352 ]
G [ 344 304 307 318 282 322 335 324 304 301 280 273 300 262 240 180 66 19 112 177 0 1139 60 393 212 244 298 239 318 340 335 335 382 346 363 352 346 356 330 325 353 333 344 338 349 346 325 347 367 327 ]
T [ 231 237 264 236 238 233 221 218 243 235 254 274 180 224 355 594 813 1012 127 3 0 5 12 37 147 239 195 309 241 254 232 224 220 221 206 232 217 233 248 230 209 221 226 261 218 227 243 216 206 231 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.00 -0.01 -0.01 -0.03 -0.03 -0.02 -0.01 0.01 0.00 0.00 0.00 ]
C [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.01 0.03 -0.01 0.02 0.01 -0.00 0.00 0.00 -0.00 ]
G [ 0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 0.03 0.00 0.01 0.00 0.00 -0.00 0.00 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.02 -0.02 -0.01 -0.01 -0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2017

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 269

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 152

CWM

PFM

     

HCWM

2 profiles found for the same TF (E2F8) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001167.1 E2F8 ENCSR897ZXU MCF-7 Homo sapiens MA0865.3
BP001168.1 E2F8 ENCSR953DVM K562 Homo sapiens MA0865.3
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