Detailed information of deep learning profile BP001166.1

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This page shows detailed deep learning-derived predictions and motifs for E2F8 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: E2F8
Model ID: BP001166.1
Cell line/tissue: GM12878
Class: Fork head/winged helix factors
Family: E2F
JASPAR ID: MA0865.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: A0AVK6  
Source: ENCSR793HVL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.02 0.01 0.01 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.03 0.01 0.01 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 231 206 216 243 227 218 261 226 221 209 230 248 233 217 232 206 221 220 224 232 254 241 309 195 239 147 37 12 5 0 3 127 1012 813 594 355 224 180 274 254 235 243 218 221 233 238 236 264 237 231 ]
C [ 327 367 347 325 346 349 338 344 333 353 325 330 356 346 352 363 346 382 335 335 340 318 239 298 244 212 393 60 1139 0 177 112 19 66 180 240 262 300 273 280 301 304 324 335 322 282 318 307 304 344 ]
G [ 352 352 342 348 364 335 324 365 370 365 366 349 336 387 347 365 366 313 342 375 336 398 333 395 327 291 696 1078 6 1150 952 893 89 220 201 251 355 410 379 406 395 347 382 368 384 403 381 347 377 349 ]
T [ 240 225 245 234 213 248 227 215 226 223 229 223 225 200 219 216 217 235 249 208 220 193 269 262 340 500 24 0 0 0 18 18 30 51 175 304 309 260 224 210 219 256 226 226 211 227 215 232 232 226 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.02 -0.02 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.00 -0.00 0.00 0.00 0.01 0.00 0.03 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 0.00 ]
G [ -0.00 0.00 0.00 -0.00 0.01 0.02 -0.01 0.03 0.01 0.01 -0.00 0.00 -0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.00 0.01 -0.01 -0.02 -0.03 -0.03 -0.01 -0.01 -0.00 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2017

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 269

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 152

CWM

PFM

     

HCWM

2 profiles found for the same TF (E2F8) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001167.1 E2F8 ENCSR897ZXU MCF-7 Homo sapiens MA0865.3
BP001168.1 E2F8 ENCSR953DVM K562 Homo sapiens MA0865.3
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