Detailed information of deep learning profile BP001133.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF384 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF384
Model ID: BP001133.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1125.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8TF68  
Source: ENCSR000DYP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 0.01 0.02 0.02 0.03 0.04 0.06 0.07 0.07 0.07 0.06 0.05 0.04 0.03 0.02 0.02 0.01 0.01 0.01 ]
C [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3320 3139 3267 3220 3217 3075 3040 2741 2781 2692 2496 2470 2596 2876 3481 4096 4803 5354 5966 6556 7296 8711 9237 9260 9263 9263 9255 9192 8003 6732 6003 5567 5233 4796 4337 4044 3779 3557 3456 3581 3482 3438 3280 3237 3130 3272 3207 3126 3014 2998 ]
C [ 1770 1839 1831 1842 1993 2072 2256 2418 2348 2336 2450 2403 2300 2239 2039 1802 1371 993 618 394 279 29 1 1 0 1 3 22 372 664 931 1030 1068 1324 1508 1660 1725 1707 1740 1721 1734 1714 1809 1688 1744 1796 1857 1856 1899 1925 ]
G [ 2206 2333 2266 2288 2046 1961 1744 1708 1656 1625 1645 1665 1559 1547 1430 1388 1215 1161 1126 1035 942 437 23 4 2 1 4 31 350 887 1271 1490 1633 1679 1854 1908 1913 2012 1980 1906 1886 1870 1934 2005 2008 1896 1976 1938 2034 1956 ]
T [ 1970 1955 1902 1916 2010 2158 2226 2399 2481 2613 2675 2728 2811 2604 2316 1980 1877 1758 1556 1281 749 89 5 1 1 1 4 21 541 983 1061 1179 1332 1467 1567 1654 1849 1990 2090 2058 2164 2244 2243 2336 2384 2302 2226 2346 2319 2387 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.02 0.03 0.03 0.05 0.06 0.07 0.07 0.07 0.06 0.05 0.04 0.03 0.03 0.02 0.02 0.01 ]
C [ 0.00 0.00 -0.00 -0.01 -0.02 -0.03 -0.03 -0.04 -0.04 -0.04 -0.03 -0.02 -0.02 -0.01 -0.00 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.00 -0.00 -0.01 -0.01 -0.02 -0.02 -0.02 -0.02 -0.02 -0.01 -0.00 0.00 0.01 0.01 0.01 ]
T [ 0.00 -0.00 -0.00 -0.01 -0.01 -0.02 -0.03 -0.03 -0.03 -0.03 -0.03 -0.02 -0.02 -0.01 -0.01 -0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1650

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 635

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 462

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 341

CWM

PFM

     

HCWM

3 profiles found for the same TF (ZNF384) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001134.1 ZNF384 ENCSR000EFP K562 Homo sapiens MA1125.2
BP001135.1 ZNF384 ENCSR101FJU HepG2 Homo sapiens MA1125.2
BP001136.1 ZNF384 ENCSR882ICT HEK293T Homo sapiens MA1125.2
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