Detailed information of deep learning profile BP001133.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF384 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF384
Model ID: BP001133.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1125.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8TF68  
Source: ENCSR000DYP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
T [ 0.01 0.01 0.01 0.02 0.02 0.03 0.04 0.05 0.06 0.07 0.07 0.07 0.06 0.04 0.03 0.02 0.02 0.01 0.01 0.00 ]

Frequency matrix

       
A [ 2387 2319 2346 2226 2302 2384 2336 2243 2244 2164 2058 2090 1990 1849 1654 1567 1467 1332 1179 1061 983 541 21 4 1 1 1 5 89 749 1281 1556 1758 1877 1980 2316 2604 2811 2728 2675 2613 2481 2399 2226 2158 2010 1916 1902 1955 1970 ]
C [ 1956 2034 1938 1976 1896 2008 2005 1934 1870 1886 1906 1980 2012 1913 1908 1854 1679 1633 1490 1271 887 350 31 4 1 2 4 23 437 942 1035 1126 1161 1215 1388 1430 1547 1559 1665 1645 1625 1656 1708 1744 1961 2046 2288 2266 2333 2206 ]
G [ 1925 1899 1856 1857 1796 1744 1688 1809 1714 1734 1721 1740 1707 1725 1660 1508 1324 1068 1030 931 664 372 22 3 1 0 1 1 29 279 394 618 993 1371 1802 2039 2239 2300 2403 2450 2336 2348 2418 2256 2072 1993 1842 1831 1839 1770 ]
T [ 2998 3014 3126 3207 3272 3130 3237 3280 3438 3482 3581 3456 3557 3779 4044 4337 4796 5233 5567 6003 6732 8003 9192 9255 9263 9263 9260 9237 8711 7296 6556 5966 5354 4803 4096 3481 2876 2596 2470 2496 2692 2781 2741 3040 3075 3217 3220 3267 3139 3320 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.01 -0.01 -0.01 -0.02 -0.02 -0.03 -0.03 -0.03 -0.03 -0.03 -0.02 -0.01 -0.01 -0.00 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.00 -0.00 -0.01 -0.02 -0.02 -0.02 -0.02 -0.02 -0.01 -0.01 -0.00 0.00 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.00 -0.00 -0.01 -0.02 -0.02 -0.03 -0.04 -0.04 -0.04 -0.03 -0.03 -0.02 -0.01 -0.00 0.00 0.00 ]
T [ 0.01 0.02 0.02 0.03 0.03 0.04 0.05 0.06 0.07 0.07 0.07 0.06 0.05 0.03 0.03 0.02 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1650

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 635

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 462

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 341

CWM

PFM

     

HCWM

3 profiles found for the same TF (ZNF384) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001134.1 ZNF384 ENCSR000EFP K562 Homo sapiens MA1125.2
BP001135.1 ZNF384 ENCSR101FJU HepG2 Homo sapiens MA1125.2
BP001136.1 ZNF384 ENCSR882ICT HEK293T Homo sapiens MA1125.2
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