Detailed information of deep learning profile BP001132.1

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This page shows detailed deep learning-derived predictions and motifs for TCF12 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF12
Model ID: BP001132.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA1648.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q99081  
Source: ENCSR725VFL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.03 0.00 0.00 0.01 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.00 0.02 0.01 0.00 0.03 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1522 1517 1516 1568 1486 1606 1650 1549 1575 1475 1634 1533 1701 1576 1568 1664 1883 1890 1435 2507 1457 0 5992 1 525 0 0 143 1399 1477 1379 1303 1465 1425 1245 1336 1631 1448 1509 1383 1478 1423 1506 1539 1540 1562 1489 1554 1495 1458 ]
C [ 1451 1460 1447 1486 1471 1458 1471 1416 1423 1567 1385 1448 1488 1440 1612 1589 1477 1438 1767 558 1351 5991 0 10 2356 0 0 1987 1234 1297 1491 1391 1202 1363 1503 1522 1427 1519 1398 1562 1525 1458 1456 1368 1530 1455 1465 1522 1550 1560 ]
G [ 1544 1514 1584 1496 1596 1553 1513 1537 1597 1527 1578 1599 1432 1643 1478 1368 1608 1653 1539 2085 3131 1 0 5981 3111 0 5992 1434 1150 1697 1550 1654 1699 1775 1535 1622 1487 1479 1666 1567 1576 1540 1589 1539 1561 1492 1553 1490 1521 1544 ]
T [ 1475 1501 1445 1442 1439 1375 1358 1490 1397 1423 1395 1412 1371 1333 1334 1371 1024 1011 1251 842 53 0 0 0 0 5992 0 2428 2209 1521 1572 1644 1626 1429 1709 1512 1447 1546 1419 1480 1413 1571 1441 1546 1361 1483 1485 1426 1426 1430 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.01 0.01 -0.01 0.02 -0.02 -0.00 -0.01 -0.01 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.03 -0.01 0.01 0.02 -0.00 -0.01 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 -0.01 -0.01 0.02 0.01 -0.01 0.03 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.00 -0.02 0.03 -0.01 0.01 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2000

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1418

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1268

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 352

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 333

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 181

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 107

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 24

CWM

PFM

     

HCWM

2 profiles found for the same TF (TCF12) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001130.1 TCF12 ENCSR000BGZ GM12878 Homo sapiens MA1648.2
BP001131.1 TCF12 ENCSR000BIT H1 Homo sapiens MA1648.2
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