Detailed information of deep learning profile BP001130.1

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This page shows detailed deep learning-derived predictions and motifs for TCF12 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF12
Model ID: BP001130.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA1648.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q99081  
Source: ENCSR000BGZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 0.00 0.04 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.06 0.00 0.01 0.05 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.06 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.04 0.00 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1984 1906 1823 1932 1875 2061 1853 1893 1892 1884 1929 1798 2208 1817 1972 2087 2158 2169 2864 3464 1 7985 2 7 13 2 57 1331 1345 1322 1271 1779 1595 1594 1716 1849 1726 1851 1823 1866 1787 1814 1838 1834 1893 1929 1890 1910 1909 1879 ]
C [ 2065 2048 2079 2109 2273 2159 2168 2140 2162 2215 2077 2142 2096 2354 2191 2254 2014 1903 1807 2247 8019 24 3343 8002 9 1 3656 2231 1908 2331 2572 1922 2191 2300 2163 2153 2129 2017 2190 2028 2145 2129 2169 2087 2150 2068 2046 2042 2042 2103 ]
G [ 2098 2037 2120 2098 2052 2058 2131 2174 2083 2091 2024 2414 2104 2005 2021 2158 2248 2176 2092 2217 0 5 4272 11 1 8017 2422 1226 3025 2082 2042 2347 2483 2029 2244 2054 2238 2271 2102 2160 2146 2064 2093 2084 2084 2062 2134 2139 2083 2087 ]
T [ 1873 2029 1998 1881 1820 1742 1868 1813 1883 1830 1990 1666 1612 1844 1836 1521 1600 1772 1257 92 0 6 403 0 7997 0 1885 3232 1742 2285 2135 1972 1751 2097 1897 1964 1927 1881 1905 1966 1942 2013 1920 2015 1893 1961 1950 1929 1986 1951 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.00 0.01 0.01 -0.01 0.04 -0.03 -0.01 -0.02 -0.02 -0.03 -0.01 -0.00 -0.01 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.01 0.06 -0.02 0.02 0.05 -0.00 -0.02 0.02 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.02 -0.02 0.00 0.05 0.02 -0.02 0.06 0.01 0.01 0.02 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.03 -0.02 -0.03 -0.01 -0.03 0.04 -0.01 0.01 0.01 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1978

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1322

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 620

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 555

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 23

CWM

PFM

     

HCWM

2 profiles found for the same TF (TCF12) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001131.1 TCF12 ENCSR000BIT H1 Homo sapiens MA1648.2
BP001132.1 TCF12 ENCSR725VFL GM12878 Homo sapiens MA1648.2
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