Detailed information of deep learning profile BP001132.1

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This page shows detailed deep learning-derived predictions and motifs for TCF12 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF12
Model ID: BP001132.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA1648.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q99081  
Source: ENCSR725VFL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.03 0.00 0.01 0.02 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.03 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.02 0.00 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1430 1426 1426 1485 1483 1361 1546 1441 1571 1413 1480 1419 1546 1447 1512 1709 1429 1626 1644 1572 1521 2209 2428 0 5992 0 0 0 0 53 842 1251 1011 1024 1371 1334 1333 1371 1412 1395 1423 1397 1490 1358 1375 1439 1442 1445 1501 1475 ]
C [ 1544 1521 1490 1553 1492 1561 1539 1589 1540 1576 1567 1666 1479 1487 1622 1535 1775 1699 1654 1550 1697 1150 1434 5992 0 3111 5981 0 1 3131 2085 1539 1653 1608 1368 1478 1643 1432 1599 1578 1527 1597 1537 1513 1553 1596 1496 1584 1514 1544 ]
G [ 1560 1550 1522 1465 1455 1530 1368 1456 1458 1525 1562 1398 1519 1427 1522 1503 1363 1202 1391 1491 1297 1234 1987 0 0 2356 10 0 5991 1351 558 1767 1438 1477 1589 1612 1440 1488 1448 1385 1567 1423 1416 1471 1458 1471 1486 1447 1460 1451 ]
T [ 1458 1495 1554 1489 1562 1540 1539 1506 1423 1478 1383 1509 1448 1631 1336 1245 1425 1465 1303 1379 1477 1399 143 0 0 525 1 5992 0 1457 2507 1435 1890 1883 1664 1568 1576 1701 1533 1634 1475 1575 1549 1650 1606 1486 1568 1516 1517 1522 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.01 0.01 -0.01 0.03 -0.02 -0.00 -0.01 -0.01 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.03 -0.01 0.01 0.02 -0.01 -0.01 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 -0.01 -0.00 0.02 0.01 -0.01 0.03 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.00 -0.02 0.02 -0.01 0.01 0.01 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2000

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1418

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1268

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 352

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 333

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 181

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 107

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 24

CWM

PFM

     

HCWM

2 profiles found for the same TF (TCF12) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001130.1 TCF12 ENCSR000BGZ GM12878 Homo sapiens MA1648.2
BP001131.1 TCF12 ENCSR000BIT H1 Homo sapiens MA1648.2
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