Detailed information of deep learning profile BP001131.1

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This page shows detailed deep learning-derived predictions and motifs for TCF12 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF12
Model ID: BP001131.1
Cell line/tissue: H1
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA1648.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q99081  
Source: ENCSR000BIT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 0.04 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.06 0.00 0.02 0.05 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.07 0.01 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.04 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 726 660 672 816 726 651 853 702 754 714 681 733 730 640 725 906 699 714 726 693 671 915 1322 1 3053 1 0 2 0 20 621 592 614 553 784 729 627 691 778 711 673 667 715 677 695 718 695 747 741 700 ]
C [ 787 796 779 809 770 843 712 883 825 891 820 930 874 830 854 736 800 904 902 882 937 909 546 3057 2 2831 3058 2 0 806 844 950 867 910 865 809 812 753 766 729 815 827 794 781 790 782 840 810 873 878 ]
G [ 794 821 864 718 777 740 752 755 803 801 826 721 698 780 793 736 832 729 757 815 785 624 1159 2 3 6 0 0 3060 1604 672 797 733 763 684 765 761 793 727 822 865 747 783 759 761 739 735 755 715 763 ]
T [ 753 783 745 717 787 826 743 720 678 654 733 676 758 810 688 682 729 713 675 670 667 612 33 0 2 222 2 3056 0 630 923 721 846 834 727 757 860 823 789 798 707 819 768 843 814 821 790 748 731 719 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 0.00 0.01 0.01 -0.01 0.04 -0.04 -0.01 -0.02 -0.01 -0.03 -0.01 -0.00 -0.00 -0.01 ]
C [ 0.00 0.01 0.01 0.01 0.01 0.02 0.06 -0.00 0.03 0.05 -0.02 -0.02 0.02 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.02 -0.02 -0.01 0.04 0.01 0.00 0.07 0.03 0.01 0.02 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.00 -0.01 -0.02 -0.02 -0.02 -0.01 -0.04 0.04 -0.02 0.01 0.01 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1721

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1581

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 697

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 156

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 97

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 60

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 29

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 26

CWM

PFM

     

HCWM

2 profiles found for the same TF (TCF12) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001130.1 TCF12 ENCSR000BGZ GM12878 Homo sapiens MA1648.2
BP001132.1 TCF12 ENCSR725VFL GM12878 Homo sapiens MA1648.2
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