Detailed information of deep learning profile BP001131.1

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This page shows detailed deep learning-derived predictions and motifs for TCF12 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF12
Model ID: BP001131.1
Cell line/tissue: H1
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA1648.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q99081  
Source: ENCSR000BIT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 0.04 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.01 0.07 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.02 0.00 0.06 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.04 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 719 731 748 790 821 814 843 768 819 707 798 789 823 860 757 727 834 846 721 923 630 0 3056 2 222 2 0 33 612 667 670 675 713 729 682 688 810 758 676 733 654 678 720 743 826 787 717 745 783 753 ]
C [ 763 715 755 735 739 761 759 783 747 865 822 727 793 761 765 684 763 733 797 672 1604 3060 0 0 6 3 2 1159 624 785 815 757 729 832 736 793 780 698 721 826 801 803 755 752 740 777 718 864 821 794 ]
G [ 878 873 810 840 782 790 781 794 827 815 729 766 753 812 809 865 910 867 950 844 806 0 2 3058 2831 2 3057 546 909 937 882 902 904 800 736 854 830 874 930 820 891 825 883 712 843 770 809 779 796 787 ]
T [ 700 741 747 695 718 695 677 715 667 673 711 778 691 627 729 784 553 614 592 621 20 0 2 0 1 3053 1 1322 915 671 693 726 714 699 906 725 640 730 733 681 714 754 702 853 651 726 816 672 660 726 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.01 0.01 -0.02 0.04 -0.04 -0.01 -0.02 -0.02 -0.02 -0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.02 0.01 0.03 0.07 0.00 0.01 0.04 -0.01 -0.02 0.02 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 0.02 -0.02 -0.02 0.05 0.03 -0.00 0.06 0.02 0.01 0.01 0.01 0.01 0.00 ]
T [ -0.01 -0.00 -0.00 -0.01 -0.03 -0.01 -0.02 -0.01 -0.04 0.04 -0.01 0.01 0.01 0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1721

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1581

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 697

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 156

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 97

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 60

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 29

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 26

CWM

PFM

     

HCWM

2 profiles found for the same TF (TCF12) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001130.1 TCF12 ENCSR000BGZ GM12878 Homo sapiens MA1648.2
BP001132.1 TCF12 ENCSR725VFL GM12878 Homo sapiens MA1648.2
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