Detailed information of deep learning profile BP001130.1

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This page shows detailed deep learning-derived predictions and motifs for TCF12 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF12
Model ID: BP001130.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA1648.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q99081  
Source: ENCSR000BGZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 0.00 0.04 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 0.06 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.05 0.01 0.00 0.06 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.04 0.00 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1951 1986 1929 1950 1961 1893 2015 1920 2013 1942 1966 1905 1881 1927 1964 1897 2097 1751 1972 2135 2285 1742 3232 1885 0 7997 0 403 6 0 92 1257 1772 1600 1521 1836 1844 1612 1666 1990 1830 1883 1813 1868 1742 1820 1881 1998 2029 1873 ]
C [ 2087 2083 2139 2134 2062 2084 2084 2093 2064 2146 2160 2102 2271 2238 2054 2244 2029 2483 2347 2042 2082 3025 1226 2422 8017 1 11 4272 5 0 2217 2092 2176 2248 2158 2021 2005 2104 2414 2024 2091 2083 2174 2131 2058 2052 2098 2120 2037 2098 ]
G [ 2103 2042 2042 2046 2068 2150 2087 2169 2129 2145 2028 2190 2017 2129 2153 2163 2300 2191 1922 2572 2331 1908 2231 3656 1 9 8002 3343 24 8019 2247 1807 1903 2014 2254 2191 2354 2096 2142 2077 2215 2162 2140 2168 2159 2273 2109 2079 2048 2065 ]
T [ 1879 1909 1910 1890 1929 1893 1834 1838 1814 1787 1866 1823 1851 1726 1849 1716 1594 1595 1779 1271 1322 1345 1331 57 2 13 7 2 7985 1 3464 2864 2169 2158 2087 1972 1817 2208 1798 1929 1884 1892 1893 1853 2061 1875 1932 1823 1906 1984 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.01 0.01 -0.01 0.04 -0.03 -0.01 -0.03 -0.02 -0.03 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.02 0.01 0.01 0.06 -0.02 0.02 0.05 0.00 -0.02 0.02 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.02 -0.02 -0.00 0.05 0.02 -0.02 0.06 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.01 -0.00 -0.01 -0.03 -0.02 -0.02 -0.01 -0.03 0.04 -0.01 0.01 0.01 0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1978

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1322

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 620

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 555

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 23

CWM

PFM

     

HCWM

2 profiles found for the same TF (TCF12) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001131.1 TCF12 ENCSR000BIT H1 Homo sapiens MA1648.2
BP001132.1 TCF12 ENCSR725VFL GM12878 Homo sapiens MA1648.2
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