JASPAR - NFYB - BP001116.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for NFYB in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	NFYB
Model ID:	BP001116.1
Cell line/tissue:	GM12878
Class:	Heteromeric CCAAT-binding factors
Family:	Heteromeric CCAAT-binding
JASPAR ID:	MA0502.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P25208
Source:	ENCSR000DNM
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 18288

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.01	0.01	-0.00	-0.00	0.09	0.10	-0.00	-0.00	0.02	-0.00	0.00	0.00	-0.00	]
C [	0.01	0.01	-0.00	-0.00	0.11	0.08	-0.00	-0.00	0.00	0.02	-0.00	-0.00	0.00	-0.00	-0.00	]
G [	-0.00	-0.00	0.01	0.01	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.01	0.02	-0.00	0.01	0.01	]
T [	0.00	0.00	-0.00	-0.00	0.00	-0.00	0.00	-0.00	0.12	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	]

Frequency matrix

A [	4317	5191	6155	5019	2496	2759	4089	3390	2320	3795	6303	7711	7382	7622	1775	2034	6410	9189	3	103	17749	17792	13	1497	12657	2217	6233	7390	2365	2303	4240	3851	2329	2906	3222	3532	4288	3950	5901	2955	3315	3647	5227	5088	6683	4656	4670	3439	4787	4653	]
C [	4874	5839	5360	4395	4824	4229	5557	4274	4928	4487	3632	3640	4452	4153	5979	5671	4250	932	18225	18055	15	113	167	12047	1134	3093	7116	1377	6767	4810	7616	3184	4064	3684	2786	3659	5331	3789	3298	3847	5631	3641	5877	6260	4116	3810	3959	4592	4392	4008	]
G [	4817	4775	3553	5073	6573	6385	3879	4273	4842	5171	3399	4790	3162	3140	2964	6848	6891	6783	22	92	9	355	6	4003	4321	11883	2795	6710	6408	5574	4025	4108	9681	4047	10000	6055	6091	4534	5966	8383	6418	5737	4150	3970	4248	6745	5900	4241	4247	4533	]
T [	4280	2483	3220	3801	4395	4915	4763	6351	6198	4835	4954	2147	3292	3373	7570	3735	737	1384	38	38	515	28	18102	741	176	1095	2144	2811	2748	5601	2407	7145	2214	7651	2280	5042	2578	6015	3123	3103	2924	5263	3034	2970	3241	3077	3759	6016	4862	5094	]

Hypothetical CWM

A [	-0.00	0.01	-0.01	-0.02	0.03	0.03	-0.06	-0.03	0.10	0.10	-0.06	0.01	0.04	0.01	0.02	0.01	0.01	0.00	-0.00	0.01	-0.01	-0.00	-0.03	-0.01	-0.00	-0.01	-0.01	]
C [	0.01	0.01	0.03	0.04	0.01	-0.01	0.11	0.08	-0.07	-0.04	0.02	0.04	-0.01	0.01	0.01	-0.00	0.01	0.02	0.01	0.00	0.01	0.01	0.01	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	0.03	0.03	-0.03	0.00	-0.03	-0.00	-0.08	0.00	0.05	0.03	0.01	0.02	0.02	0.01	0.02	0.02	0.02	0.01	0.05	0.02	0.01	0.01	0.01	]
T [	0.00	0.00	0.01	0.01	-0.02	-0.00	-0.01	-0.03	0.02	-0.05	0.12	-0.01	-0.06	-0.00	0.00	0.01	0.00	0.01	-0.00	-0.00	-0.00	0.00	-0.02	-0.01	-0.01	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 178

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 102

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 46

CWM

PFM

HCWM

4 profiles found for the same TF (NFYB) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001117.1	NFYB	ENCSR000DNR	HeLa-S3	Homo sapiens	MA0502.3
BP001118.1	NFYB	ENCSR000EGQ	K562	Homo sapiens	MA0502.3
BP001119.1	NFYB	ENCSR146UIC	WTC11	Homo sapiens	MA0502.3
BP001120.1	NFYB	ENCSR935GZV	HepG2	Homo sapiens	MA0502.3