JASPAR - NFYB - BP001116.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for NFYB in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	NFYB
Model ID:	BP001116.1
Cell line/tissue:	GM12878
Class:	Heteromeric CCAAT-binding factors
Family:	Heteromeric CCAAT-binding
JASPAR ID:	MA0502.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P25208
Source:	ENCSR000DNM
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 18288

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.12	-0.00	0.00	-0.00	0.00	-0.00	-0.00	0.00	0.00	]
C [	0.01	0.01	-0.00	0.02	0.01	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.01	0.01	-0.00	-0.00	]
G [	-0.00	-0.00	0.00	-0.00	-0.00	0.02	0.00	-0.00	-0.00	0.08	0.11	-0.00	-0.00	0.01	0.01	]
T [	-0.00	0.00	0.00	-0.00	0.02	-0.00	-0.00	0.10	0.09	-0.00	-0.00	0.01	0.01	-0.00	-0.00	]

Frequency matrix

A [	5094	4862	6016	3759	3077	3241	2970	3034	5263	2924	3103	3123	6015	2578	5042	2280	7651	2214	7145	2407	5601	2748	2811	2144	1095	176	741	18102	28	515	38	38	1384	737	3735	7570	3373	3292	2147	4954	4835	6198	6351	4763	4915	4395	3801	3220	2483	4280	]
C [	4533	4247	4241	5900	6745	4248	3970	4150	5737	6418	8383	5966	4534	6091	6055	10000	4047	9681	4108	4025	5574	6408	6710	2795	11883	4321	4003	6	355	9	92	22	6783	6891	6848	2964	3140	3162	4790	3399	5171	4842	4273	3879	6385	6573	5073	3553	4775	4817	]
G [	4008	4392	4592	3959	3810	4116	6260	5877	3641	5631	3847	3298	3789	5331	3659	2786	3684	4064	3184	7616	4810	6767	1377	7116	3093	1134	12047	167	113	15	18055	18225	932	4250	5671	5979	4153	4452	3640	3632	4487	4928	4274	5557	4229	4824	4395	5360	5839	4874	]
T [	4653	4787	3439	4670	4656	6683	5088	5227	3647	3315	2955	5901	3950	4288	3532	3222	2906	2329	3851	4240	2303	2365	7390	6233	2217	12657	1497	13	17792	17749	103	3	9189	6410	2034	1775	7622	7382	7711	6303	3795	2320	3390	4089	2759	2496	5019	6155	5191	4317	]

Hypothetical CWM

A [	-0.00	-0.00	-0.01	-0.01	-0.02	0.00	-0.00	-0.00	-0.00	0.01	0.00	0.01	0.00	-0.00	-0.06	-0.01	0.12	-0.05	0.02	-0.03	-0.01	-0.00	-0.02	0.01	0.01	0.00	0.00	]
C [	0.01	0.01	0.01	0.02	0.05	0.01	0.02	0.02	0.02	0.01	0.02	0.02	0.01	0.03	0.05	0.00	-0.08	-0.00	-0.03	0.00	-0.03	0.03	0.03	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.00	0.01	0.02	0.01	-0.00	0.01	0.01	-0.01	0.04	0.02	-0.04	-0.07	0.08	0.11	-0.01	0.01	0.04	0.03	0.01	0.01	]
T [	-0.01	-0.01	-0.00	-0.01	-0.03	-0.00	-0.01	0.01	-0.00	0.00	0.01	0.01	0.02	0.01	0.04	0.01	-0.06	0.10	0.10	-0.03	-0.06	0.03	0.03	-0.02	-0.01	0.01	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 178

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 102

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 46

CWM

PFM

HCWM

4 profiles found for the same TF (NFYB) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001117.1	NFYB	ENCSR000DNR	HeLa-S3	Homo sapiens	MA0502.3
BP001118.1	NFYB	ENCSR000EGQ	K562	Homo sapiens	MA0502.3
BP001119.1	NFYB	ENCSR146UIC	WTC11	Homo sapiens	MA0502.3
BP001120.1	NFYB	ENCSR935GZV	HepG2	Homo sapiens	MA0502.3