Detailed information of deep learning profile BP001072.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA3 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA3
Model ID: BP001072.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA1683.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55318  
Source: ENCSR231ZVN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.00 0.04 0.04 0.06 -0.00 0.05 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.04 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.04 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 ]
T [ 0.00 -0.00 -0.00 0.00 0.02 -0.00 0.01 0.00 0.06 0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2081 2146 1976 2425 2090 2092 2074 1970 1918 2028 2510 2098 2150 2374 2067 1763 1738 1992 1407 2687 3756 3093 660 9 5769 7014 7612 13 7504 3094 2620 1884 2304 2516 2069 2005 2127 2236 2029 2065 2653 2641 2113 2023 2024 2117 2210 2531 2567 2031 ]
C [ 1632 1972 1962 1576 1655 1621 1650 1938 1889 1945 1638 1575 1629 1947 1677 1801 2154 2327 3023 419 827 72 13 51 1873 590 13 5811 36 1340 1525 1505 2134 1735 1446 2052 1902 1519 1589 1528 1524 1597 1463 1967 1644 2003 1638 1650 1641 2058 ]
G [ 1993 1645 1686 1749 1608 1713 2042 1593 1723 1702 1580 2005 1964 1546 1642 1632 1972 1963 1074 332 2401 1325 6927 6 19 29 17 14 23 1610 2108 3049 1715 1580 2124 1680 1751 1991 2211 2232 1557 1600 2049 1672 1608 1658 1957 1725 1632 1644 ]
T [ 1980 1923 2062 1936 2333 2260 1920 2185 2156 2011 1958 2008 1943 1819 2300 2490 1822 1404 2182 4248 702 3196 86 7620 25 53 44 1848 123 1642 1433 1248 1533 1855 2047 1949 1906 1940 1857 1861 1952 1848 2061 2024 2410 1908 1881 1780 1846 1953 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 0.01 0.02 0.02 0.02 -0.04 0.05 0.04 0.06 -0.04 0.05 0.01 0.01 0.00 0.01 ]
C [ 0.01 0.01 0.01 0.02 -0.01 -0.01 -0.02 -0.04 0.02 0.03 0.01 -0.03 0.05 -0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.00 -0.02 0.02 -0.01 0.04 -0.04 -0.05 -0.04 -0.02 -0.03 -0.02 0.01 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.00 0.01 0.03 -0.01 0.03 -0.01 0.06 -0.04 -0.01 -0.01 0.04 -0.00 0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4432

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2080

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 426

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 83

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 27

CWM

PFM

     

HCWM

2 profiles found for the same TF (FOXA3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001071.1 FOXA3 ENCSR092OVN HepG2 Homo sapiens MA1683.2
BP001073.1 FOXA3 ENCSR788DXU K562 Homo sapiens MA1683.2
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