Detailed information of deep learning profile BP001071.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA3
Model ID: BP001071.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA1683.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55318  
Source: ENCSR092OVN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.07 0.00 0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.06 -0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.06 0.00 0.00 0.01 0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
T [ 0.00 -0.00 0.00 0.00 0.06 0.00 0.08 0.06 0.05 -0.00 0.00 0.00 0.01 0.01 -0.00 ]

Frequency matrix

       
A [ 3817 3656 3988 4286 4091 4101 3854 3860 3710 3997 3879 3996 3962 4142 3691 3109 2561 3333 3704 222 3962 7 18 10 15104 169 6644 1617 7280 3877 2508 3622 4585 4423 3595 4224 4251 4184 4171 4240 4275 3949 4226 4517 4128 4046 3832 4007 3989 3874 ]
C [ 3353 3815 3236 3426 3427 3931 3166 3211 4124 3944 3984 3500 3520 4055 3310 3495 5401 3932 3338 35 1 5 3 3 1 13701 2596 4461 611 2700 4188 3865 3259 3317 3205 3524 3592 3249 3378 3232 3177 3902 3522 3248 3422 3329 3301 3707 3433 3271 ]
G [ 3321 3362 3858 3237 3577 3013 3232 3167 3223 3099 3122 3428 3789 3045 3780 4253 3339 2785 2591 8 11170 1 840 3671 20 18 152 1642 1039 5307 4106 4247 3495 3316 3742 3396 3369 3289 3503 3665 3740 3296 3258 3321 3283 3767 3776 3295 3606 3711 ]
T [ 4643 4301 4052 4185 4039 4089 4882 4896 4077 4094 4149 4210 3863 3892 4353 4277 3833 5084 5501 14869 1 15121 14273 11450 9 1246 5742 7414 6204 3250 4332 3400 3795 4078 4592 3990 3922 4412 4082 3997 3942 3987 4128 4048 4301 3992 4225 4125 4106 4278 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.00 0.00 -0.02 0.04 -0.02 -0.02 -0.03 0.07 -0.01 0.02 -0.01 0.02 0.00 ]
C [ 0.02 0.02 0.02 0.01 -0.01 -0.03 -0.01 -0.04 -0.05 -0.04 0.06 0.01 0.03 -0.01 0.01 ]
G [ 0.02 0.02 0.02 0.01 -0.02 0.08 -0.04 0.03 0.04 0.04 -0.02 -0.00 0.00 0.00 0.02 ]
T [ 0.00 -0.00 0.00 0.01 0.06 -0.06 0.08 0.06 0.07 -0.03 0.02 0.01 0.02 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6076

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4748

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3397

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1944

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1830

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1681

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 881

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 735

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 164

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 97

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 51

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 23

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 20

CWM

PFM

     

HCWM

2 profiles found for the same TF (FOXA3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001072.1 FOXA3 ENCSR231ZVN K562 Homo sapiens MA1683.2
BP001073.1 FOXA3 ENCSR788DXU K562 Homo sapiens MA1683.2
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